CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g32765

Gene name SUMO5 (SMALL UBIQUITINRELATED MODIFIER 5)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.25 22.6 At2g32765 817837 SUMO5 (SMALL UBIQUITINRELATED MODIFIER 5) Encodes a small ubiquitin-like modifier (SUMO) protein that becomes covalently attached to various intracellular protein targets through an isopeptide bond. SUMOylation typically has a post-translational effect on the behavior of the target protein. S.X. H.G.
0.60 75.7 At2g26330 817173 ER (ERECTA) Homologous to receptor protein kinases. Involved in specification of organs originating from the shoot apical meristem. Contains a cytoplasmic protein kinase catalytic domain, a transmembrane region, and an extracellular leucine-rich repeat. ER has been identified as a quantitative trait locus for transpiration efficiency by influencing epidermal and mesophyll development, stomatal density and porosity of leaves. It has been implicated in resistance to the bacterium Ralstonia solanacearum and to the necrotrophic fungus Plectosphaerella cucumerina. Together with ERL1 and ERL2, ER governs the initial decision of protodermal cells to either divide proliferatively to produce pavement cells or divide asymmetrically to generate stomatal complexes. S.X. H.G.
0.55 70.6 At5g07180 830609 ERL2 (ERECTA-LIKE 2) Encodes a receptor-like kinase that, together with ER and ERL1 governs the initial decision of protodermal cells to either divide proliferatively to produce pavement cells or divide asymmetrically to generate stomatal complexes. It is also important for maintaining stomatal stem cell activity and preventing terminal differentiation of the meristemoid into the guard mother cell. When heterozygous in an er/erl1 null background, plants are female sterile due to cell division defect in the integuments. S.X. H.G.
0.50 65.3 At1g44760 841040 universal stress protein (USP) family protein F:molecular_function unknown;P:response to stress;C:unknown;PMO S.X. H.G.
0.33 38.1 At1g67040 843024 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
55.3 99.8 GSM10442 WT Ovule 2 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
51.6 99.8 GSM10446 WT 24-Hr Seed 2 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
43.6 99.8 GSM311282 Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
38.9 99.8 GSM47019 Ler 9 GSE2473 Small RNA biogenesis mutants
38.8 99.8 GSM10441 WT Ovule 1 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
37.0 99.7 E-MEXP-1592-raw-cel-1617526856
36.1 99.7 E-MEXP-1592-raw-cel-1617526888
35.0 99.7 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
33.6 99.7 E-TABM-63-raw-cel-681136761
33.3 99.7 E-MEXP-1592-raw-cel-1617526848
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 1e-2 40 At5g66950 836829 catalytic/ pyridoxal phosphate binding F:pyridoxal phosphate binding, catalytic activity;P:biological_process unknown;C:plasma membrane;PMFOBA C.G. S.X.
0.01 4e-2 38 At1g79090 844250 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOB C.G. S.X.
0.01 4e-2 38 At1g09730 837501 Ulp1 protease family protein F:cysteine-type peptidase activity;P:proteolysis;C:cellular_component unknown;MOFPBVA C.G. S.X.
0.04 2e-1 36 At5g37200 833694 zinc finger (C3HC4-type RING finger) family protein F:protein binding, transferase activity, transferring glycosyl groups, transcription factor activity, zinc ion binding;P:unknown;C:unknown;PMOFV C.G. S.X.
0.02 2e-1 36 At5g49950 835059 embryogenesis-associated protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BOMFP C.G. S.X.
0.02 6e-1 34 At5g24230 832490 - F:unknown;P:unknown;C:cellular_component unknown;PFM C.G. S.X.
0.02 6e-1 34 At5g17900 831658 - F:molecular_function unknown;P:biological_process unknown;C:extracellular region;MOFBPVA C.G. S.X.
0.03 6e-1 34 At5g13250 831165 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OMFPB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 2e-1 36 Glycine max GmaAffx.770.3.S1_at BI427205 - - 8e-1 At4g10270 wound-responsive family protein C.G. S.X.
0.03 1e+0 32 Hordeum vulgare Contig15242_at Contig15242 - - 1e+0 At3g60540 sec61beta family protein C.G. S.X.
0.04 5e+0 32 Oryza sativa OsAffx.375.1.S1_at - - - 0 C.G. S.X.
0.03 3e+0 32 Populus trichocarpa PtpAffx.65771.2.A1_a_at CV242987 hypothetical protein - 3e-23 At1g11390 ABC1 family protein C.G. S.X.
0.04 6e-1 34 Triticum aestivum TaAffx.15974.3.S1_at CA665292 - - 1e+0 At2g32765 SUMO5 (SMALL UBIQUITINRELATED MODIFIER 5) C.G. S.X.
0.04 3e+0 30 Vitis vinifera 1622507_at CB975105 - - 6e-20 At1g51410 cinnamyl-alcohol dehydrogenase, putative (CAD) C.G. S.X.
0.03 1e+0 32 Zea mays Zm.16228.1.S1_a_at BU197473 hypothetical protein LOC100275186 - 2e-2 At4g17310 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006464 The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification).
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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