CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g32370

Gene name HDG3 (HOMEODOMAIN GLABROUS 3)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.60 75.7 At2g32370 817798 HDG3 (HOMEODOMAIN GLABROUS 3) Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Together with ATML1 and PDF2, it is involved in cotyledon development. S.X. H.G.
0.76 87.4 At4g26590 828766 OPT5 (OLIGOPEPTIDE TRANSPORTER 5) oligopeptide transporter S.X. H.G.
0.75 86.9 At2g46960 819310 CYP709B1 member of CYP709B S.X. H.G.
0.74 86.1 At2g42860 818886 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPV S.X. H.G.
0.73 85.5 At5g58500 835963 LSH5 (LIGHT SENSITIVE HYPOCOTYLS 5) F:molecular_function unknown;P:biological_process unknown;C:unknown;PM S.X. H.G.
0.73 85.5 At1g34580 840362 monosaccharide transporter, putative F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOA S.X. H.G.
0.68 82.2 At3g20210 821565 DELTA-VPE Encodes a vacuolar processing enzyme with caspase-1-like activity that is specifically expressed in inner integument of developing seeds. Mutants display abnormal seed coat development. It is speculated to be involved in cell death of limited cell layers, the purpose of which is to form a seed coat. S.X. H.G.
0.68 82.2 At1g61720 842469 BAN (BANYULS) Negative regulator of flavonoid biosynthesis, mutants accumulate flavonoid pigments in their seed coat, putative oxidoreductase. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium. S.X. H.G.
0.65 79.6 At5g13670 831212 nodulin MtN21 family protein F:unknown;P:unknown;C:endomembrane system, membrane;BOPAM S.X. H.G.
0.62 77.3 At3g17600 821026 IAA31 (INDOLE-3-ACETIC ACID INDUCIBLE 31) Encodes a member of the Aux/IAA family of proteins implicated in auxin signaling. IAA31 shares several residues with the conserved domain II region, believed to act as a degron in many of the rapidly degraded Aux/IAA family members. An IAA31 fusion protein is quite long-lived, but can be degraded more rapidly in the presence of auxin. Unlike many other family members, IAA31 transcript levels do not rise in response to auxin. Nevertheless, overexpression of IAA31 leads to defects in auxin-related processes such as gravitropism, root development, shoot development, and cotyledon vascular development. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
471.4 100.0 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
392.2 100.0 GSM133820 Yang_1-5_young-pod_Rep3_ATH1 GSE5736 To identify changes in gene expression during silique senescence in Arabidopsis thaliana
371.4 100.0 GSM284390 Arabidopsis GPE2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
260.8 100.0 GSM10449 WT Cotyledon Stage Seed 2 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
241.2 100.0 GSM10479 lec1-1 Cotyledon Stage Seed 1 GSE1051 Seed development in LEAFY COTYLEDON1 mutants
195.3 100.0 GSM10480 lec1-1 Cotyledon Stage Seed 2 GSE1051 Seed development in LEAFY COTYLEDON1 mutants
135.9 99.9 GSM10448 WT Cotyledon Stage Seed 1 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
135.4 99.9 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
112.7 99.9 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
105.3 99.9 GSM147965 lec1-1 Globular Stage Seed 1 GSE1051 Seed development in LEAFY COTYLEDON1 mutants
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.17 2e-23 111 At1g05230 839256 HDG2 (HOMEODOMAIN GLABROUS 2) Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. C.G. S.X.
0.03 1e-12 75 At4g21750 828263 ATML1 (MERISTEM LAYER 1) Encodes a homeobox protein similar to GL2. It is expressed in both the apical and basal daughter cells of the zygote as well as their progeny. Expression is detected starting the two-celled stage of embryo development and is later restricted to the outermost, epidermal cell layer from its inception. Its promoter is highly modular with each region contributing to specific aspects of the gene's spatial and temporal expression. Double mutant analysis with PDF2, another L1-specific gene, suggests that their functions are partially redundant and the absence of both of the genes result in abnormal shoot development. C.G. S.X.
0.05 3e-7 57 At4g04890 825828 PDF2 (PROTODERMAL FACTOR 2) Encodes a homeodomain protein that is expressed in the LI layer of the vegetative, floral and inflorescence meristems. Binds to the L1 box promoter element which is required in some proteins for L1 specific expression. C.G. S.X.
0.01 3e-1 38 At2g22780 816808 PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1) encodes an peroxisomal NAD-malate dehydrogenase that is involved in fatty acid beta-oxidation through providing NAD to the process of converting fatty acyl CoA to acetyl CoA. C.G. S.X.
0.01 1e+0 36 At5g51890 835264 peroxidase encodes peroxidase involved in the lignification of tracheary elements (TE) in roots C.G. S.X.
0.01 1e+0 36 At5g52170 835293 HDG7 (HOMEODOMAIN GLABROUS 7) Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 6e-3 44 Glycine max GmaAffx.72258.1.S1_at BF067925 - - 1e-15 At4g21750 ATML1 (MERISTEM LAYER 1) C.G. S.X.
0.02 2e-3 44 Hordeum vulgare HC114G08_SK_at HC114G08_SK - - 6e-2 At2g45520 unknown protein C.G. S.X.
0.05 9e-6 54 Oryza sativa Os04g0627000 AB101645.1 - Roc1 5e-19 At4g21750 ATML1 (MERISTEM LAYER 1) C.G. S.X.
0.04 1e-4 50 Populus trichocarpa PtpAffx.215385.1.S1_at pmrna29542 hypothetical protein - 2e-20 At1g17920 HDG12 (HOMEODOMAIN GLABROUS 12) C.G. S.X.
0.03 5e+0 34 Triticum aestivum TaAffx.26550.1.S1_at CA687722 - - 8e-3 At4g21750 ATML1 (MERISTEM LAYER 1) C.G. S.X.
0.01 3e-1 36 Vitis vinifera 1621283_at AF257777.1 H+-pyrophosphatase - 1e-93 At1g15690 AVP1 C.G. S.X.
0.01 2e+0 34 Zea mays Zm.1928.1.A1_at CK368069 hypothetical protein LOC100279329 - 6e+0 At3g46000 ADF2 (ACTIN DEPOLYMERIZING FACTOR 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0048825 The process whose specific outcome is the progression of the cotyledon over time, from its formation to the mature structure. The cotyledon is the modified leaf (seed leaf), found as part of the embryo in plant seeds. It is involved in either storage or absorption of food reserves. Dicotyledonous seeds contain two cotyledons, while monocotyledonous seeds contain only one. The cotyledons may appear above ground and show photosynthetic activity in the seedling.
C GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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