Gene omics information

Query gene ID At2g32370
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6075.7At2g32370817798HDG3 (HOMEODOMAIN GLABROUS 3)Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Together with ATML1 and PDF2, it is involved in cotyledon development.S.X.H.G.
0.7687.4At4g26590828766OPT5 (OLIGOPEPTIDE TRANSPORTER 5)oligopeptide transporterS.X.H.G.
0.7586.9At2g46960819310CYP709B1member of CYP709BS.X.H.G.
0.7486.1At2g42860818886unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVS.X.H.G.
0.7385.5At5g58500835963LSH5 (LIGHT SENSITIVE HYPOCOTYLS 5)F:molecular_function unknown;P:biological_process unknown;C:unknown;PMS.X.H.G.
0.7385.5At1g34580840362monosaccharide transporter, putativeF:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOAS.X.H.G.
0.6882.2At3g20210821565DELTA-VPEEncodes a vacuolar processing enzyme with caspase-1-like activity that is specifically expressed in inner integument of developing seeds. Mutants display abnormal seed coat development. It is speculated to be involved in cell death of limited cell layers, the purpose of which is to form a seed coat.S.X.H.G.
0.6882.2At1g61720842469BAN (BANYULS)Negative regulator of flavonoid biosynthesis, mutants accumulate flavonoid pigments in their seed coat, putative oxidoreductase. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium.S.X.H.G.
0.6579.6At5g13670831212nodulin MtN21 family proteinF:unknown;P:unknown;C:endomembrane system, membrane;BOPAMS.X.H.G.
0.6277.3At3g17600821026IAA31 (INDOLE-3-ACETIC ACID INDUCIBLE 31)Encodes a member of the Aux/IAA family of proteins implicated in auxin signaling. IAA31 shares several residues with the conserved domain II region, believed to act as a degron in many of the rapidly degraded Aux/IAA family members. An IAA31 fusion protein is quite long-lived, but can be degraded more rapidly in the presence of auxin. Unlike many other family members, IAA31 transcript levels do not rise in response to auxin. Nevertheless, overexpression of IAA31 leads to defects in auxin-related processes such as gravitropism, root development, shoot development, and cotyledon vascular development.S.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
471.4100.0GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
392.2100.0GSM133820Yang_1-5_young-pod_Rep3_ATH1GSE5736To identify changes in gene expression during silique senescence in Arabidopsis thaliana
371.4100.0GSM284390Arabidopsis GPE2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
260.8100.0GSM10449WT Cotyledon Stage Seed 2GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
241.2100.0GSM10479lec1-1 Cotyledon Stage Seed 1GSE1051Seed development in LEAFY COTYLEDON1 mutants
195.3100.0GSM10480lec1-1 Cotyledon Stage Seed 2GSE1051Seed development in LEAFY COTYLEDON1 mutants
135.999.9GSM10448WT Cotyledon Stage Seed 1GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
105.399.9GSM147965lec1-1 Globular Stage Seed 1GSE1051Seed development in LEAFY COTYLEDON1 mutants
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.172e-23111At1g05230839256HDG2 (HOMEODOMAIN GLABROUS 2)Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family.C.G.S.X.
0.031e-1275At4g21750828263ATML1 (MERISTEM LAYER 1)Encodes a homeobox protein similar to GL2. It is expressed in both the apical and basal daughter cells of the zygote as well as their progeny. Expression is detected starting the two-celled stage of embryo development and is later restricted to the outermost, epidermal cell layer from its inception. Its promoter is highly modular with each region contributing to specific aspects of the gene's spatial and temporal expression. Double mutant analysis with PDF2, another L1-specific gene, suggests that their functions are partially redundant and the absence of both of the genes result in abnormal shoot development.C.G.S.X.
0.053e-757At4g04890825828PDF2 (PROTODERMAL FACTOR 2)Encodes a homeodomain protein that is expressed in the LI layer of the vegetative, floral and inflorescence meristems. Binds to the L1 box promoter element which is required in some proteins for L1 specific expression.C.G.S.X.
0.013e-138At2g22780816808PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1)encodes an peroxisomal NAD-malate dehydrogenase that is involved in fatty acid beta-oxidation through providing NAD to the process of converting fatty acyl CoA to acetyl CoA.C.G.S.X.
0.011e+036At5g51890835264peroxidaseencodes peroxidase involved in the lignification of tracheary elements (TE) in rootsC.G.S.X.
0.011e+036At5g52170835293HDG7 (HOMEODOMAIN GLABROUS 7)Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family.C.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.056e-344Glycine maxGmaAffx.72258.1.S1_atBF067925--1e-15At4g21750ATML1 (MERISTEM LAYER 1)C.G.S.X.
0.022e-344Hordeum vulgareHC114G08_SK_atHC114G08_SK--6e-2At2g45520unknown proteinC.G.S.X.
0.059e-654Oryza sativaOs04g0627000AB101645.1-Roc15e-19At4g21750ATML1 (MERISTEM LAYER 1)C.G.S.X.
0.041e-450Populus trichocarpaPtpAffx.215385.1.S1_atpmrna29542hypothetical protein-2e-20At1g17920HDG12 (HOMEODOMAIN GLABROUS 12)C.G.S.X.
0.035e+034Triticum aestivumTaAffx.26550.1.S1_atCA687722--8e-3At4g21750ATML1 (MERISTEM LAYER 1)C.G.S.X.
0.013e-136Vitis vinifera1621283_atAF257777.1H+-pyrophosphatase-1e-93At1g15690AVP1C.G.S.X.
0.012e+034Zea maysZm.1928.1.A1_atCK368069hypothetical protein LOC100279329-6e+0At3g46000ADF2 (ACTIN DEPOLYMERIZING FACTOR 2)C.G.S.X.
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Biological processes

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ECCGO IDProcess Name
XGO:0048825The process whose specific outcome is the progression of the cotyledon over time, from its formation to the mature structure. The cotyledon is the modified leaf (seed leaf), found as part of the embryo in plant seeds. It is involved in either storage or absorption of food reserves. Dicotyledonous seeds contain two cotyledons, while monocotyledonous seeds contain only one. The cotyledons may appear above ground and show photosynthetic activity in the seedling.
CGO:0006355Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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