CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g32290

Gene name BAM6 (BETA-AMYLASE 6)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.96 97.3 At2g32290 817789 BAM6 (BETA-AMYLASE 6) F:cation binding, beta-amylase activity, catalytic activity;P:cellulose biosynthetic process, carbohydrate metabolic process, polysaccharide catabolic process;C:chloroplast;PBO S.X. H.G.
0.34 39.8 At4g00780 828009 meprin and TRAF homology domain-containing protein / MATH domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM S.X. H.G.
0.34 39.8 At4g12310 826840 CYP706A5 member of CYP706A S.X. H.G.
0.33 38.1 At1g23130 838921 Bet v I allergen family protein F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P S.X. H.G.
0.32 35.7 At1g51805 841607 leucine-rich repeat protein kinase, putative F:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA S.X. H.G.
0.32 35.7 At1g10760 837619 SEX1 (STARCH EXCESS 1) Encodes an α-glucan, water dikinase required for starch degradation. Involved in cold-induced freezing tolerance. Mutations that eliminate the GWD protein or affect the dikinase domain of the enzyme dramatically reduce both the amount of phosphate in the amylopectin and the rate of starch degradation. Mature leaves of these mutants accumulate amounts of starch up to seven times greater than those in wild-type leaves. NMR analysis of the mutants, suggests that the gene is specifically involved in the phosphorylation of the glucosyl residues of starch at the C6 position. S.X. H.G.
0.30 32.1 At3g46970 823850 PHS2 (ALPHA-GLUCAN PHOSPHORYLASE 2) Encodes a cytosolic alpha-glucan phosphorylase. In vitro, the enzyme has a preference for branched polysaccharides, such as glycogen. S.X. H.G.
0.29 30.3 At3g52180 824383 SEX4 (STARCH-EXCESS 4) Encodes a plant-specific protein phosphatase that contains a protein tyrosine phosphatase (PTP) catalytic domain and a kinase interaction sequence (KIS) domain. This protein interacts with the plant SnRK AKIN11. Binds starch. Localized in the chloroplast. S.X. H.G.
0.28 30.3 At1g65790 842890 ARK1 (A. THALIANA RECEPTOR KINASE 1) An alternatively spliced gene that encodes a functional transmembrane receptor serine/threonine kinase, alternate form may not have transmembrane domain. S.X. H.G.
0.27 26.2 At3g18500 821380 - F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFOB S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
133.3 99.9 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
94.4 99.9 GSM269822 T6 leaf-well watered-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
76.1 99.9 E-ATMX-32-raw-cel-1562974621
75.8 99.9 E-ATMX-32-raw-cel-1562974681
71.4 99.9 GSM269815 T6 leaf-drought-rep1 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
67.5 99.8 E-ATMX-32-raw-cel-1562974595
58.3 99.8 GSM260879 A2-Greco-WT GSE10322 Higher order transcriptional regulation conferred by the bountiful gain of function mutant
58.1 99.8 E-ATMX-32-raw-cel-1562974409
57.4 99.8 E-ATMX-32-raw-cel-1562974527
56.5 99.8 GSM269833 T8 leaf-drought-rep3 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.09 6e-2 40 At4g15210 827185 BAM5 (BETA-AMYLASE 5) cytosolic beta-amylase expressed in rosette leaves and inducible by sugar. RAM1 mutants have reduced beta amylase in leaves and stems. C.G. S.X.
0.02 2e-1 38 At5g55700 835664 BAM4 (BETA-AMYLASE 4) In vitro assay indicates no beta-amylase activity of BAM4. However mutation in BAM4 impairs starch breakdown. BAM4 may play a regulatory role. C.G. S.X.
0.01 2e-1 38 At5g65570 836683 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:unknown;POMFB C.G. S.X.
0.03 2e-1 38 At2g45880 819196 BAM7 (BETA-AMYLASE 7) F:cation binding, beta-amylase activity, catalytic activity;P:cellulose biosynthetic process, carbohydrate metabolic process, polysaccharide catabolic process;C:cellular_component unknown;PBOF C.G. S.X.
0.02 2e-1 38 At1g07320 837243 RPL4 encodes a plastid ribosomal protein L4 C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.12 2e-11 71 Glycine max Gma.595.1.S1_at AB004271.1 beta-amylase - 2e-11 At2g32290 BAM6 (BETA-AMYLASE 6) C.G. S.X.
0.06 7e-3 42 Hordeum vulgare Contig1406_at Contig1406 - - 1e-2 At2g32290 BAM6 (BETA-AMYLASE 6) C.G. S.X.
0.04 2e-3 46 Oryza sativa Os07g0543300 BM418911 - Glycoside hydrolase, family 14B, plant protein 2e+1 At5g43401 - C.G. S.X.
0.20 9e-14 79 Populus trichocarpa Ptp.3245.1.S1_s_at CV276464 hypothetical protein - 7e-14 At2g32290 BAM6 (BETA-AMYLASE 6) C.G. S.X.
0.03 6e-2 40 Triticum aestivum Ta.27780.1.S1_x_at CD916747 beta amylase - 2e-2 At4g15210 BAM5 (BETA-AMYLASE 5) C.G. S.X.
0.03 3e-1 36 Vitis vinifera 1621861_at CF209183 - - 5e-15 At5g55700 BAM4 (BETA-AMYLASE 4) C.G. S.X.
0.04 2e-2 40 Zea mays Zm.80.1.A1_at CD972407 beta-amylase - 6e-2 At2g32290 BAM6 (BETA-AMYLASE 6) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0000272 The chemical reactions and pathways resulting in the breakdown of polysaccharides, polymers of more than 10 monosaccharide residues joined by glycosidic linkages.
L GO:0005975 The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00005 Starch and maltose degradation
00412 Glycoside Hydrolase

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage