CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g32140

Gene name transmembrane receptor

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At2g32140 817773 transmembrane receptor F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane, chloroplast;PBO S.X. H.G.
0.96 97.3 At2g22760 816806 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFOMA S.X. H.G.
0.94 96.7 At1g08860 837408 BON3 (BONZAI 3) Encodes a copine-like protein, which is a member of a newly identified class of calcium-dependent, phospholipid binding proteins that are present in a wide range of organisms. Overexpression of this gene suppresses bon1-1 phenotypes. Double mutant analyses with bon1-1 suggest that BON1 and BON3 have overlapping functions in maintaining cellular homeostasis and inhibiting cell death. S.X. H.G.
0.93 96.4 At3g23220 821900 DNA binding / transcription factor encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. S.X. H.G.
0.92 96.0 At5g24110 832476 WRKY30 member of WRKY Transcription Factor; Group III S.X. H.G.
0.91 95.6 At2g31690 817725 lipase class 3 family protein encodes a triacylglycerol lipase located in plastoglobuli and involved in the degradation of triacylglycerol. It also has impact on leaf senescence and maintaining the structural integrity of thylakoids. S.X. H.G.
0.89 94.6 At1g69930 843329 ATGSTU11 (GLUTATHIONE S-TRANSFERASE TAU 11) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). S.X. H.G.
0.89 94.6 At2g37430 818319 zinc finger (C2H2 type) family protein (ZAT11) F:transcription factor activity, zinc ion binding, nucleic acid binding;P:response to chitin, regulation of transcription;C:intracellular;MPOF S.X. H.G.
0.88 94.0 At1g22810 838887 AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. S.X. H.G.
0.88 94.0 At1g30370 839917 lipase class 3 family protein F:triacylglycerol lipase activity;P:lipid metabolic process;C:unknown;PBOFMV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
830.7 100.0 E-MEXP-807-raw-cel-1173273144
796.6 100.0 E-MEXP-807-raw-cel-1173273252
538.9 100.0 E-MEXP-807-raw-cel-1173273088
507.3 100.0 E-MEXP-807-raw-cel-1173273196
336.4 100.0 E-MEXP-807-raw-cel-1173273170
329.0 100.0 E-MEXP-807-raw-cel-1173273116
262.0 100.0 E-MEXP-807-raw-cel-1173273060
234.6 100.0 E-MEXP-807-raw-cel-1173273223
69.2 99.9 GSM13779 Dexamethasone plus cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
65.6 99.8 GSM13784 Cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.30 1e-72 274 At2g32130 817772 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO C.G. S.X.
0.19 2e-49 196 At1g19960 838585 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOB C.G. S.X.
0.29 1e-35 151 At1g65390 842851 ATPP2-A5 (ARABIDOPSIS THALIANA PHLOEM PROTEIN 2 A5) F:carbohydrate binding;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane, chloroplast;PB C.G. S.X.
0.16 6e-16 85 At1g29300 839804 UNE1 (unfertilized embryo sac 1) F:unknown;P:double fertilization forming a zygote and endosperm;C:unknown;PBOMF C.G. S.X.
0.09 2e-6 54 At5g45070 834538 AtPP2-A8 (Phloem protein 2-A8) F:carbohydrate binding;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;P C.G. S.X.
0.01 9e-6 52 At5g44870 834517 disease resistance protein (TIR-NBS-LRR class), putative F:protein binding, transmembrane receptor activity, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFA C.G. S.X.
0.02 5e-4 46 At4g19530 827695 disease resistance protein (TIR-NBS-LRR class), putative Encodes a TIR-NB-LRR resistance protein. Transient expression in tobacco induces cell death. C.G. S.X.
0.02 5e-4 46 At4g23510 828451 disease resistance protein (TIR class), putative F:transmembrane receptor activity;P:defense response signaling pathway, resistance gene-dependent, signal transduction, defense response, innate immune response;C:intrinsic to membrane;PBO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 5e-2 40 Glycine max GmaAffx.17492.1.S1_at BE822327 - - 2e-2 At1g19960 - C.G. S.X.
0.02 7e-2 38 Hordeum vulgare Contig19293_at Contig19293 - - 5e-1 At1g19960 - C.G. S.X.
0.02 7e-2 40 Oryza sativa Os01g0332900 9629.m02213 - Hypothetical protein 5e-4 At4g11660 AT-HSFB2B C.G. S.X.
0.03 7e-1 36 Populus trichocarpa PtpAffx.207592.1.S1_at pmrna15066 hypothetical protein - 3e+0 At5g14370 - C.G. S.X.
0.02 2e+0 34 Triticum aestivum Ta.18769.1.S1_at CA641983 - - 3e+0 At5g28720 unknown protein C.G. S.X.
0.03 6e-1 34 Vitis vinifera 1621681_at CB003394 - - 1e-3 At2g03030 Toll-Interleukin-Resistance (TIR) domain-containing protein C.G. S.X.
0.03 2e-1 36 Zea mays Zm.17908.1.S1_at CK786805 - - 3e-1 At1g19960 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006952 Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
L GO:0007165 The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell.
L GO:0045087 Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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