CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g32100

Gene name OFP16 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 16)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At2g32100 817770 OFP16 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 16) F:unknown;P:biological_process unknown;C:cellular_component unknown;PB S.X. H.G.
0.40 50.8 At1g51400 841564 photosystem II 5 kD protein F:molecular_function unknown;P:response to UV-B, response to wounding, response to ozone;C:chloroplast thylakoid membrane, chloroplast photosystem II, chloroplast thylakoid lumen;P S.X. H.G.
0.33 38.1 At5g16030 831460 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVBA S.X. H.G.
0.20 14.4 At2g29290 817478 tropinone reductase, putative / tropine dehydrogenase, putative F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAV S.X. H.G.
0.18 11.4 At1g03130 838400 PSAD-2 (photosystem I subunit D-2) Encodes a protein predicted by sequence similarity with spinach PsaD to be photosystem I reaction center subunit II (PsaD2) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
32.5 99.7 E-MEXP-694-raw-cel-922863399
30.4 99.7 E-ATMX-30-raw-cel-1513696930
28.2 99.7 GSM128749 De Veylder_1-1_wildtype_Rep1_ATH1 GSE5529 Arabidopsis E2F target genes
23.6 99.6 GSM131060 Hammond_2-1_Col2wildtype_Rep1_ATH1 GSE5611 Differential gene expression patterns in the phosphate deficient mutant, pho 1
23.1 99.6 GSM260957 A5-LLOYD-CON_REP2 GSE10326 Transcriptome analysis of pho3
21.0 99.6 E-MEXP-838-raw-cel-1160703990
20.1 99.6 E-MEXP-838-raw-cel-1160703895
20.0 99.6 E-ATMX-33-raw-cel-1562596310
19.8 99.6 GSM133861 Beynon_1-4-cat-SpikeMix4_Rep1_ATH1 GSE5739 Comparison of CATMA, Affymetrix and Agilent arrays
19.2 99.6 GSM133859 Beynon_1-2-cat-SpikeMix2_Rep1_ATH1 GSE5739 Comparison of CATMA, Affymetrix and Agilent arrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.33 1e-13 77 At1g05420 837043 OFP12 (OVATE FAMILY PROTEIN 12) F:unknown;P:biological_process unknown;C:unknown;PM C.G. S.X.
0.03 6e-3 42 At4g32610 829396 unknown protein F:unknown;P:unknown;C:mitochondrial matrix;MOFBPVA C.G. S.X.
0.01 6e-3 42 At1g72440 843576 EDA25 (embryo sac development arrest 25) F:unknown;P:polar nucleus fusion;C:endomembrane system;BOMFPVA C.G. S.X.
0.02 9e-2 38 At4g36550 829807 binding / ubiquitin-protein ligase F:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:ubiquitin ligase complex;POMFBV C.G. S.X.
0.02 9e-2 38 At2g12875 815766 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA C.G. S.X.
0.02 9e-2 38 At1g56660 842121 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e-1 38 Glycine max Gma.11672.1.S1_at BF425929 - - 2e-1 At3g53670 unknown protein C.G. S.X.
0.04 2e-1 36 Hordeum vulgare HVSMEb0008G01r2_at HVSMEb0008G01r2 - - 5e-1 At4g18170 WRKY28 C.G. S.X.
0.03 2e-1 38 Oryza sativa Os07g0663700 AK107619.1 - Short-chain dehydrogenase/reductase SDR familyprotein 3e+0 At3g51680 short-chain dehydrogenase/reductase (SDR) family protein C.G. S.X.
0.07 2e-6 54 Populus trichocarpa PtpAffx.205697.1.S1_at pmrna11251 hypothetical protein - 2e-6 At2g32100 OFP16 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 16) C.G. S.X.
0.04 4e-1 36 Triticum aestivum TaAffx.58712.1.S1_at CA617012 - - 1e-4 At3g57150 NAP57 (Arabidopsis thaliana homologue of NAP57) C.G. S.X.
0.03 3e-2 38 Vitis vinifera 1610866_a_at CB971085 hypothetical protein LOC100247183 - 1e-6 At1g22300 GRF10 (GENERAL REGULATORY FACTOR 10) C.G. S.X.
0.03 4e-2 38 Zea mays ZmAffx.440.1.A1_at AI676978 - - 2e-4 At1g54410 dehydrin family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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