Gene omics information

Query gene ID At2g31380
Gene name STH
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4457.2At2g31380817696STHa B-box zinc finger protein that interacts with COP1. contains a novel 11 amino acid motif at the C-terminus (also found at the N-terminus of HY5) that is involved in the COP1 interaction.S.X.H.G.
0.8994.6At3g12320820411unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POS.X.H.G.
0.7586.9At2g46830819296CCA1 (CIRCADIAN CLOCK ASSOCIATED 1)Encodes a transcriptional repressor that performs overlapping functions with LHY in a regulatory feedback loop that is closely associated with the circadian oscillator of Arabidopsis. Binds to the evening element in the promoter of TOC1 and represses TOC1 transcription. CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis.S.X.H.G.
0.7385.5At3g54500824615-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFBS.X.H.G.
0.6075.7At3g09600820117myb family transcription factorF:transcription factor activity, DNA binding;P:in 9 processes;C:chloroplast;PMOFS.X.H.G.
0.5065.3At5g06980830589unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
34.499.7GSM74901Wildtype_24H Cold_Rep2GSE3326ICE1 regulation of the Arabidopsis Cold-Responsive Transcriptome
31.799.7GSM74898Wildtype_6H Cold_Rep1GSE3326ICE1 regulation of the Arabidopsis Cold-Responsive Transcriptome
26.299.7GSM253156end of the night CGSE10016Expression data of Arabidopsis thaliana rosettes in an extended night
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.502e-58226At1g06040837113STO (SALT TOLERANCE)Encodes salt tolerance protein (STO) which confers salt tolerance to yeast cells. Fully complements calcineurin deficient yeast but does not encode a phosphoprotein phosphatase. Sequence has similarities to CONSTANS. STO co-localizes with COP1 and plays a role in light signaling.C.G.S.X.
0.091e-344At4g10240826615zinc finger (B-box type) family proteinF:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;POMC.G.S.X.
0.014e-136At3g27260822345GTE8Kinase like protein with similarity to yeast BDF1 and human RING3 protein, which have two bromodomains GTE8 has a single bromodomainC.G.S.X.
0.014e-136At3g16940820950calmodulin-binding proteinF:transcription regulator activity, calmodulin binding;P:biological_process unknown;C:cellular_component unknown;MOPFBVAC.G.S.X.
0.011e+034At4g04540825785protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAC.G.S.X.
0.011e+034At1g55130841956endomembrane protein 70, putativeF:unknown;P:unknown;C:integral to membrane, Golgi apparatus;MPOFBC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.112e-654Glycine maxGma.7484.1.S1_a_atCD412952salt-tolerance protein-3e-6At2g31380STHC.G.S.X.
0.057e-444Hordeum vulgareContig6358_atContig6358--6e-4At1g06040STO (SALT TOLERANCE)C.G.S.X.
0.043e+034Oryza sativaOsAffx.30821.1.S1_at---0C.G.S.X.
0.209e-1581Populus trichocarpaPtpAffx.5282.2.S1_s_atCX184225hypothetical protein-9e-14At1g06040STO (SALT TOLERANCE)C.G.S.X.
0.042e-240Triticum aestivumTa.27094.1.S1_atBT009289.1--2e-4At1g06040STO (SALT TOLERANCE)C.G.S.X.
0.117e-959Vitis vinifera1618741_atCF208732hypothetical protein LOC100257595-1e-10At1g06040STO (SALT TOLERANCE)C.G.S.X.
0.039e+030Zea maysZmAffx.729.1.S1_atAI740018--2e-4At4g02450glycine-rich proteinC.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
SGO:0045449Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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