CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g31380

Gene name STH

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.44 57.2 At2g31380 817696 STH a B-box zinc finger protein that interacts with COP1. contains a novel 11 amino acid motif at the C-terminus (also found at the N-terminus of HY5) that is involved in the COP1 interaction. S.X. H.G.
0.89 94.6 At3g12320 820411 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO S.X. H.G.
0.75 86.9 At2g46830 819296 CCA1 (CIRCADIAN CLOCK ASSOCIATED 1) Encodes a transcriptional repressor that performs overlapping functions with LHY in a regulatory feedback loop that is closely associated with the circadian oscillator of Arabidopsis. Binds to the evening element in the promoter of TOC1 and represses TOC1 transcription. CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis. S.X. H.G.
0.73 85.5 At3g54500 824615 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFB S.X. H.G.
0.60 75.7 At3g09600 820117 myb family transcription factor F:transcription factor activity, DNA binding;P:in 9 processes;C:chloroplast;PMOF S.X. H.G.
0.50 65.3 At5g06980 830589 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
64.4 99.8 E-MEXP-1344-raw-cel-1559561713
40.9 99.8 E-MEXP-1304-raw-cel-1530618514
37.9 99.8 E-MEXP-1304-raw-cel-1530618308
37.9 99.8 E-MEXP-1304-raw-cel-1530619115
34.4 99.7 GSM74901 Wildtype_24H Cold_Rep2 GSE3326 ICE1 regulation of the Arabidopsis Cold-Responsive Transcriptome
32.9 99.7 Evans_2-4_fab1-mut-cold_ATH1
32.6 99.7 Evans_2-2_col-WT-cold_ATH1
31.7 99.7 GSM74898 Wildtype_6H Cold_Rep1 GSE3326 ICE1 regulation of the Arabidopsis Cold-Responsive Transcriptome
28.0 99.7 GSM183506 WT_for_MYB29/76_rep3 GSE7570 ATR1_like_Clade_OE_and_miR
26.2 99.7 GSM253156 end of the night C GSE10016 Expression data of Arabidopsis thaliana rosettes in an extended night
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.50 2e-58 226 At1g06040 837113 STO (SALT TOLERANCE) Encodes salt tolerance protein (STO) which confers salt tolerance to yeast cells. Fully complements calcineurin deficient yeast but does not encode a phosphoprotein phosphatase. Sequence has similarities to CONSTANS. STO co-localizes with COP1 and plays a role in light signaling. C.G. S.X.
0.09 1e-3 44 At4g10240 826615 zinc finger (B-box type) family protein F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;POM C.G. S.X.
0.01 4e-1 36 At3g27260 822345 GTE8 Kinase like protein with similarity to yeast BDF1 and human RING3 protein, which have two bromodomains GTE8 has a single bromodomain C.G. S.X.
0.01 4e-1 36 At3g16940 820950 calmodulin-binding protein F:transcription regulator activity, calmodulin binding;P:biological_process unknown;C:cellular_component unknown;MOPFBVA C.G. S.X.
0.01 1e+0 34 At4g04540 825785 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.01 1e+0 34 At1g55130 841956 endomembrane protein 70, putative F:unknown;P:unknown;C:integral to membrane, Golgi apparatus;MPOFB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 2e-6 54 Glycine max Gma.7484.1.S1_a_at CD412952 salt-tolerance protein - 3e-6 At2g31380 STH C.G. S.X.
0.05 7e-4 44 Hordeum vulgare Contig6358_at Contig6358 - - 6e-4 At1g06040 STO (SALT TOLERANCE) C.G. S.X.
0.04 3e+0 34 Oryza sativa OsAffx.30821.1.S1_at - - - 0 C.G. S.X.
0.20 9e-15 81 Populus trichocarpa PtpAffx.5282.2.S1_s_at CX184225 hypothetical protein - 9e-14 At1g06040 STO (SALT TOLERANCE) C.G. S.X.
0.04 2e-2 40 Triticum aestivum Ta.27094.1.S1_at BT009289.1 - - 2e-4 At1g06040 STO (SALT TOLERANCE) C.G. S.X.
0.11 7e-9 59 Vitis vinifera 1618741_at CF208732 hypothetical protein LOC100257595 - 1e-10 At1g06040 STO (SALT TOLERANCE) C.G. S.X.
0.03 9e+0 30 Zea mays ZmAffx.729.1.S1_at AI740018 - - 2e-4 At4g02450 glycine-rich protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0045449 Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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