Gene omics information

Query gene ID At2g30970
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.8994.6At2g22780816808PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1)encodes an peroxisomal NAD-malate dehydrogenase that is involved in fatty acid beta-oxidation through providing NAD to the process of converting fatty acyl CoA to acetyl CoA.S.X.H.G.
0.8994.6At3g45310823669cysteine proteinase, putativeF:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPBVAFS.X.H.G.
0.8994.6At5g42890834300SCP2 (STEROL CARRIER PROTEIN 2)F:sterol carrier activity, oxidoreductase activity;P:glyoxylate metabolic process, intracellular lipid transport, fatty acid beta-oxidation, seed germination;C:peroxisome;MFOPBS.X.H.G.
0.6781.6At4g16210827314ECHIA (ENOYL-COA HYDRATASE/ISOMERASE A)F:catalytic activity;P:metabolic process;C:peroxisome;BOMFPAS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
42.699.8GSM134301Penfield_1-3_endosperm-control_Rep3_ATH1GSE5751The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
39.199.8GSM134305Penfield_1-7_endosperm-PAC_Rep1_ATH1GSE5751The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
39.099.8GSM134300Penfield_1-2_endosperm-control_Rep2_ATH1GSE5751The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
35.099.7GSM109109wild-type(Col-0) 1 day, biological rep3GSE4847Expression data from tocopherol deficient seedlings of Arabidopsis
33.699.7GSM134299Penfield_1-1_endosperm-control_Rep1_ATH1GSE5751The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.012e-138At1g62750842573SCO1 (SNOWY COTYLEDON 1)Nuclear encoded protein consists of the five domains conserved in EF-G proteins, with two GTP-binding sites in the first domain, and an additional transit peptide at the N-terminus. Localized in chloroplasts. Point mutation results in a delay in the onset of germination. At early developmental stage embryos still contain undifferentiated proplastids. The greening of cotyledons is severely impaired in light-grown mutant sco1 seedlings, whereas the following true leaves develop normally as in wild-type plants.C.G.S.X.
0.016e-136At4g27250828833dihydroflavonol 4-reductase family / dihydrokaempferol 4-reductase familyF:cinnamyl-alcohol dehydrogenase activity;P:cellular metabolic process, metabolic process;C:cellular_component unknown;BOPFMAVC.G.S.X.
0.016e-136At1g02530839282PGP12 (P-GLYCOPROTEIN 12)F:ATPase activity, coupled to transmembrane movement of substances;P:response to cyclopentenone;C:integral to membrane;BOMAFPVC.G.S.X.
0.016e-136At1g26580839198-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFC.G.S.X.
0.016e-136At1g56350842089peptide chain release factor, putativeF:translation release factor activity, codon specific, translation release factor activity;P:translational termination;C:cytoplasm;OBMFPVC.G.S.X.
0.013e+034At5g37415833717sequence-specific DNA binding / transcription factorF:transcription factor activity, sequence-specific DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;POFMC.G.S.X.
0.013e+034At5g43340834352PHT6phosphate transporterC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.406e-36153Glycine maxGma.1611.1.S1_atL40579.1mitochondrial aspartate aminotransferase-5e-36At2g30970ASP1 (ASPARTATE AMINOTRANSFERASE 1)C.G.S.X.
0.373e-41169Hordeum vulgareContig2799_atContig2799--9e-41At2g30970ASP1 (ASPARTATE AMINOTRANSFERASE 1)C.G.S.X.
0.399e-51202Oryza sativaOs02g0236000BI797474-Aspartate aminotransferase (EC (Fragment)2e+0At3g52620unknown proteinC.G.S.X.
0.592e-116420Populus trichocarpaPtpAffx.158580.1.S1_atCX659105hypothetical protein-1e-116At2g30970ASP1 (ASPARTATE AMINOTRANSFERASE 1)C.G.S.X.
0.355e-45182Triticum aestivumTa.5314.1.S1_x_atAJ609796--6e-45At2g30970ASP1 (ASPARTATE AMINOTRANSFERASE 1)C.G.S.X.
0.558e-115412Vitis vinifera1607149_atCB982262hypothetical protein LOC100254127-4e-114At2g30970ASP1 (ASPARTATE AMINOTRANSFERASE 1)C.G.S.X.
0.429e-57220Zea maysZm.5050.2.A1_atCD437126hypothetical protein LOC100274119-3e-56At2g30970ASP1 (ASPARTATE AMINOTRANSFERASE 1)C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0046686A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00006Link to KaPPA-View 4Glutamine and glutamate metabolism/Nitrate assimilation
00011Link to KaPPA-View 4Aspartate and asparagine metabolism

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

00250Link to KEGG PATHWAYAlanine, aspartate and glutamate metabolism
00270Link to KEGG PATHWAYCysteine and methionine metabolism
00330Link to KEGG PATHWAYArginine and proline metabolism
00350Link to KEGG PATHWAYTyrosine metabolism
00360Link to KEGG PATHWAYPhenylalanine metabolism
00400Link to KEGG PATHWAYPhenylalanine, tyrosine and tryptophan biosynthesis
00710Link to KEGG PATHWAYCarbon fixation in photosynthetic organisms
00950Link to KEGG PATHWAYIsoquinoline alkaloid biosynthesis
01061Link to KEGG PATHWAYBiosynthesis of phenylpropanoids
01064Link to KEGG PATHWAYBiosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid
01070Link to KEGG PATHWAYBiosynthesis of plant hormones
01100Link to KEGG PATHWAYMetabolic pathways
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