CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g30970

Gene name ASP1 (ASPARTATE AMINOTRANSFERASE 1)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.61 76.7 At2g30970 817648 ASP1 (ASPARTATE AMINOTRANSFERASE 1) ASPARTATE AMINOTRANSFERASE 1 S.X. H.G.
0.89 94.6 At2g22780 816808 PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1) encodes an peroxisomal NAD-malate dehydrogenase that is involved in fatty acid beta-oxidation through providing NAD to the process of converting fatty acyl CoA to acetyl CoA. S.X. H.G.
0.89 94.6 At3g45310 823669 cysteine proteinase, putative F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPBVAF S.X. H.G.
0.89 94.6 At5g42890 834300 SCP2 (STEROL CARRIER PROTEIN 2) F:sterol carrier activity, oxidoreductase activity;P:glyoxylate metabolic process, intracellular lipid transport, fatty acid beta-oxidation, seed germination;C:peroxisome;MFOPB S.X. H.G.
0.67 81.6 At4g16210 827314 ECHIA (ENOYL-COA HYDRATASE/ISOMERASE A) F:catalytic activity;P:metabolic process;C:peroxisome;BOMFPA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
51.6 99.8 E-MEXP-1607-raw-cel-1620685834
42.6 99.8 GSM134301 Penfield_1-3_endosperm-control_Rep3_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
40.1 99.8 E-MEXP-1607-raw-cel-1620685826
39.1 99.8 GSM134305 Penfield_1-7_endosperm-PAC_Rep1_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
39.0 99.8 GSM134300 Penfield_1-2_endosperm-control_Rep2_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
38.8 99.8 E-MEXP-1607-raw-cel-1620685810
38.1 99.8 E-MEXP-1607-raw-cel-1620685802
35.0 99.7 GSM109109 wild-type(Col-0) 1 day, biological rep3 GSE4847 Expression data from tocopherol deficient seedlings of Arabidopsis
33.6 99.7 GSM134299 Penfield_1-1_endosperm-control_Rep1_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
32.9 99.7 E-MEXP-1607-raw-cel-1620685818
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 2e-1 38 At1g62750 842573 SCO1 (SNOWY COTYLEDON 1) Nuclear encoded protein consists of the five domains conserved in EF-G proteins, with two GTP-binding sites in the first domain, and an additional transit peptide at the N-terminus. Localized in chloroplasts. Point mutation results in a delay in the onset of germination. At early developmental stage embryos still contain undifferentiated proplastids. The greening of cotyledons is severely impaired in light-grown mutant sco1 seedlings, whereas the following true leaves develop normally as in wild-type plants. C.G. S.X.
0.01 6e-1 36 At4g27250 828833 dihydroflavonol 4-reductase family / dihydrokaempferol 4-reductase family F:cinnamyl-alcohol dehydrogenase activity;P:cellular metabolic process, metabolic process;C:cellular_component unknown;BOPFMAV C.G. S.X.
0.01 6e-1 36 At4g28080 828923 binding F:binding;P:unknown;C:unknown;MBFOPAV C.G. S.X.
0.01 6e-1 36 At1g02530 839282 PGP12 (P-GLYCOPROTEIN 12) F:ATPase activity, coupled to transmembrane movement of substances;P:response to cyclopentenone;C:integral to membrane;BOMAFPV C.G. S.X.
0.01 6e-1 36 At1g26580 839198 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF C.G. S.X.
0.01 6e-1 36 At1g56350 842089 peptide chain release factor, putative F:translation release factor activity, codon specific, translation release factor activity;P:translational termination;C:cytoplasm;OBMFPV C.G. S.X.
0.01 3e+0 34 At5g37415 833717 sequence-specific DNA binding / transcription factor F:transcription factor activity, sequence-specific DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;POFM C.G. S.X.
0.01 3e+0 34 At5g43340 834352 PHT6 phosphate transporter C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.40 6e-36 153 Glycine max Gma.1611.1.S1_at L40579.1 mitochondrial aspartate aminotransferase - 5e-36 At2g30970 ASP1 (ASPARTATE AMINOTRANSFERASE 1) C.G. S.X.
0.37 3e-41 169 Hordeum vulgare Contig2799_at Contig2799 - - 9e-41 At2g30970 ASP1 (ASPARTATE AMINOTRANSFERASE 1) C.G. S.X.
0.39 9e-51 202 Oryza sativa Os02g0236000 BI797474 - Aspartate aminotransferase (EC 2.6.1.1) (Fragment) 2e+0 At3g52620 unknown protein C.G. S.X.
0.59 2e-116 420 Populus trichocarpa PtpAffx.158580.1.S1_at CX659105 hypothetical protein - 1e-116 At2g30970 ASP1 (ASPARTATE AMINOTRANSFERASE 1) C.G. S.X.
0.35 5e-45 182 Triticum aestivum Ta.5314.1.S1_x_at AJ609796 - - 6e-45 At2g30970 ASP1 (ASPARTATE AMINOTRANSFERASE 1) C.G. S.X.
0.55 8e-115 412 Vitis vinifera 1607149_at CB982262 hypothetical protein LOC100254127 - 4e-114 At2g30970 ASP1 (ASPARTATE AMINOTRANSFERASE 1) C.G. S.X.
0.42 9e-57 220 Zea mays Zm.5050.2.A1_at CD437126 hypothetical protein LOC100274119 - 3e-56 At2g30970 ASP1 (ASPARTATE AMINOTRANSFERASE 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0046686 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00006 Glutamine and glutamate metabolism/Nitrate assimilation
00011 Aspartate and asparagine metabolism

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00250 Alanine, aspartate and glutamate metabolism
00270 Cysteine and methionine metabolism
00330 Arginine and proline metabolism
00350 Tyrosine metabolism
00360 Phenylalanine metabolism
00400 Phenylalanine, tyrosine and tryptophan biosynthesis
00710 Carbon fixation in photosynthetic organisms
00950 Isoquinoline alkaloid biosynthesis
01061 Biosynthesis of phenylpropanoids
01064 Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid
01070 Biosynthesis of plant hormones
01100 Metabolic pathways
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