CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g30860

Gene name ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At2g30860 817636 ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9) Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). S.X. H.G.
0.44 57.2 At1g04410 839527 malate dehydrogenase, cytosolic, putative F:in 6 functions;P:response to cadmium ion, response to salt stress;C:in 7 components;BOMPFA S.X. H.G.
0.44 57.2 At1g13440 837904 GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2) F:NAD or NADH binding, glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity, binding, catalytic activity, glyceraldehyde-3-phosphate dehydrogenase activity;P:response to oxidative stress, response to cadmium ion, gluconeogenesis, defense response to bacterium, glycolysis;C:in 8 components;BOPFMA S.X. H.G.
0.38 46.7 At4g14880 827145 OASA1 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1) Encodes a cytosolic isoform of cytosolic O-acetylserine(thiol)lyase, a key enzyme in cysteine biosynthesis and for the fixation of inorganic sulfide. It catalyzes the formation of cysteine from O-acetylserine and inorganic sulfide. Gene expression is predominant in the root cortex and the xylem parenchyma. Gene expression is induced in leave, stems and roots by high salt and heavy metal stresses, mediated by ABA. S.X. H.G.
0.29 30.3 At4g13430 826975 IIL1 (ISOPROPYL MALATE ISOMERASE LARGE SUBUNIT 1) F:4 iron, 4 sulfur cluster binding, lyase activity, hydro-lyase activity;P:response to cadmium ion, metabolic process;C:chloroplast stroma, chloroplast;OBFMAP S.X. H.G.
0.29 30.3 At3g12290 820409 tetrahydrofolate dehydrogenase/cyclohydrolase, putative F:binding, catalytic activity;P:folic acid and derivative biosynthetic process, metabolic process;C:chloroplast;OBMFPA S.X. H.G.
0.22 17.5 At3g55440 824710 TPI (TRIOSEPHOSPHATE ISOMERASE) Encodes triosephosphate isomerase. S.X. H.G.
0.18 11.4 At5g43940 834417 HOT5 (sensitive to hot temperatures 5) Encodes a glutathione-dependent formaldehyde dehydrogenase (also known as class III type alcohol dehydrogenase) reduces S-nitrosoglutathione (GSNO), the condensation product of glutathione and NO, that is a naturally occurring NO reservoir and also a reactive nitrogen intermediate. Gene expression is reduced by wounding and induced by salicylic acid. Is required for the acclimation of plants to high temperature and for fertility. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
10.2 99.2 GSM184498 Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
9.4 99.1 GSM184495 Endodermis&Pericycle root cells 2hr KCl control treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
8.7 99.0 GSM258003 LMPC-derived phloem_2 GSE10247 Transcriptome analysis of the Arabidopsis phloem
8.7 99.0 GSM184494 Endodermis&Pericycle root cells 2hr KCl control treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
8.3 99.0 GSM184500 Endodermis&Pericycle root cells 2hr continuous KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
8.2 99.0 GSM184501 Endodermis&Pericycle root cells 2hr continuous KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
7.1 98.8 E-MEXP-173-raw-cel-357965520
6.6 98.7 GSM258002 LMPC-derived phloem_1 GSE10247 Transcriptome analysis of the Arabidopsis phloem
6.4 98.6 GSM184502 Endodermis&Pericycle root cells 2hr continuous KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
6.1 98.5 GSM157361 Ulker_2-4_WRKY-KO-30-Pst-DC3000_Rep1_ATH1 GSE6829 Group II-A WRKY transcription factors and early leaf senescence
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.65 6e-58 224 At2g30870 817637 GSTF10 (HALIANA GLUTATHIONE S-TRANSFERASE PHI 10) early dehydration-induced gene ERD13 homologous to tobacco and maize glutathione S-transferases. Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002) C.G. S.X.
0.01 3e-1 36 At4g35830 829737 aconitate hydratase, cytoplasmic / citrate hydro-lyase / aconitase (ACO) F:aconitate hydratase activity, 4 iron, 4 sulfur cluster binding;P:response to salt stress;C:mitochondrion, apoplast, plasma membrane, vacuole;OBFMAP C.G. S.X.
0.01 1e+0 34 At5g57110 835815 ACA8 (AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8) Arabidopsis-autoinhibited Ca2+ -ATPase, isoform 8, contains all of the characteristic motifs of Ca2+ -transporting P-type Ca2+ -ATPases and is localized to the plasma membrane. C.G. S.X.
0.02 1e+0 34 At5g53180 835399 PTB2 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 2) Encodes one of the two polypyrimidine tract-binding (PTB) protein homologs in the Arabidopsis genome. Double mutants have defects in pollen germination. C.G. S.X.
0.03 1e+0 34 At4g02520 827931 ATGSTF2 (GLUTATHIONE S-TRANSFERASE PHI 2) Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. C.G. S.X.
0.03 1e+0 34 At2g02930 814822 ATGSTF3 (GLUTATHIONE S-TRANSFERASE F3) Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). C.G. S.X.
0.01 1e+0 34 At1g67530 843074 armadillo/beta-catenin repeat family protein / U-box domain-containing family protein F:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:ubiquitin ligase complex;PMOFBV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 3e-2 40 Glycine max Gma.7226.4.S1_a_at AW202090 glutathione S-transferase GST 22 - 2e-2 At2g30860 ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9) C.G. S.X.
0.05 4e-8 57 Hordeum vulgare Contig6238_s_at Contig6238 - - 1e-7 At2g30860 ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9) C.G. S.X.
0.05 3e+0 34 Oryza sativa Os01g0371200 AK058900.1 - Glutathione S-transferase 1 (EC 2.5.1.18) (GSTclass-phi) 2e+0 At2g30860 ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9) C.G. S.X.
0.05 1e-1 38 Populus trichocarpa PtpAffx.214612.1.S1_at pmrna28393 hypothetical protein - 2e-2 At2g30860 ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9) C.G. S.X.
0.03 3e-1 36 Triticum aestivum TaAffx.55873.1.S1_at CA660038 - - 2e-1 At2g30860 ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9) C.G. S.X.
0.08 6e-3 40 Vitis vinifera 1610406_at AY156050.1 glutathione S-transferase 3 - 1e-2 At2g30860 ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9) C.G. S.X.
0.02 2e+0 32 Zea mays Zm.9319.1.A1_at CF627080 hypothetical protein LOC100216855 - 2e+0 At5g10000 ATFD4 (ferredoxin 4) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0042742 Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.
X GO:0006952 Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
S GO:0009407 The chemical reactions and pathways resulting in the breakdown of toxin, a poisonous compound (typically a protein) that is produced by cells or organisms and that can cause disease when introduced into the body or tissues of an organism.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00480 Glutathione metabolism
00980 Metabolism of xenobiotics by cytochrome P450
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