CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g30590

Gene name WRKY21

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At2g30590 817609 WRKY21 Encodes WRKY DNA-binding protein 21 (WRKY21). S.X. H.G.
0.52 67.4 At3g12130 820388 KH domain-containing protein / zinc finger (CCCH type) family protein F:transcription factor activity, nucleic acid binding;P:regulation of transcription;C:unknown;MPOFB S.X. H.G.
0.52 67.4 At1g14510 838013 AL7 (ALFIN-LIKE 7) AL7 encodes a member of the Alfin-Like family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA. S.X. H.G.
0.51 66.3 At3g06960 819881 PDE320 (PIGMENT DEFECTIVE 320) F:molecular_function unknown;P:acylglycerol transport;C:endoplasmic reticulum, chloroplast;P S.X. H.G.
0.51 66.3 At3g50880 824252 HhH-GPD base excision DNA repair family protein F:catalytic activity;P:DNA repair, base-excision repair;C:chloroplast;OBFPA S.X. H.G.
0.50 65.3 At3g55460 824712 SCL30 encodes an SC35-like splicing factor that is localized to nuclear specks. S.X. H.G.
0.49 63.5 At3g21350 821689 RNA polymerase transcriptional regulation mediator-related F:transcription regulator activity;P:regulation of transcription;C:nucleus;MFPO S.X. H.G.
0.48 62.5 At1g49480 841372 RTV1 (related to vernalization1 1) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;PM S.X. H.G.
0.46 59.8 At5g56900 835792 CwfJ-like family protein / zinc finger (CCCH-type) family protein F:zinc ion binding, catalytic activity, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MFOPB S.X. H.G.
0.44 57.2 At1g73820 843718 Ssu72-like family protein F:phosphoprotein phosphatase activity;P:mRNA processing;C:chloroplast;MFPO S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
78.7 99.9 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
16.7 99.5 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
13.6 99.4 GSM10449 WT Cotyledon Stage Seed 2 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
13.5 99.4 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
13.2 99.4 GSM10479 lec1-1 Cotyledon Stage Seed 1 GSE1051 Seed development in LEAFY COTYLEDON1 mutants
11.2 99.2 GSM10448 WT Cotyledon Stage Seed 1 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
10.9 99.2 E-MEXP-1797-raw-cel-1669767994
10.6 99.2 GSM176879 AWP_Control_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
10.5 99.2 GSM242962 Mock day 7 (day7E2) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
10.2 99.2 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.20 8e-31 135 At5g28650 832971 WRKY74 member of WRKY Transcription Factor; Group II-d C.G. S.X.
0.07 6e-10 65 At3g58710 825040 WRKY69 member of WRKY Transcription Factor; Group II-e C.G. S.X.
0.11 1e-8 61 At3g04670 819625 WRKY39 member of WRKY Transcription Factor; Group II-d C.G. S.X.
0.08 4e-8 59 At4g24240 828525 WRKY7 Encodes a Ca-dependent calmodulin binding protein. Sequence similarity to the WRKY transcription factor gene family. C.G. S.X.
0.09 4e-8 59 At2g23320 816864 WRKY15 Encodes WRKY DNA-binding protein 15 (WRKY15). C.G. S.X.
0.07 2e-6 54 At1g29280 839802 WRKY65 member of WRKY Transcription Factor; Group II-e C.G. S.X.
0.05 4e-5 50 At5g52830 835360 WRKY27 Encodes a WRKY transcription factor WRKY27. Mutation in Arabidopsis WRKY27 results in delayed symptom development in response to the bacterial wilt pathogen Ralstonia solanacearum. C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.12 1e-14 81 Glycine max Gma.15748.1.A1_at AI900530 transcription factor - 2e-5 At5g28650 WRKY74 C.G. S.X.
0.09 3e-7 56 Hordeum vulgare Contig22226_at Contig22226 - - 6e-6 At3g04670 WRKY39 C.G. S.X.
0.06 3e-10 67 Oryza sativa Os12g0597700 AK070648.1 - Probable WRKY transcription factor 15 (WRKYDNA-binding protein 15) 4e-28 At5g28650 WRKY74 C.G. S.X.
0.20 3e-59 230 Populus trichocarpa PtpAffx.37459.1.S1_at CK090406 hypothetical protein - 3e-59 At2g30590 WRKY21 C.G. S.X.
0.04 4e-2 40 Triticum aestivum Ta.25722.1.A1_at CD374046 - - 2e-2 At2g30590 WRKY21 C.G. S.X.
0.08 5e-8 57 Vitis vinifera 1611285_s_at CA809190 similar to DNA-binding protein - 3e-22 At4g31550 WRKY11 C.G. S.X.
0.05 2e-1 36 Zea mays Zm.18373.1.A1_at CO520243 WRKY transcription factor 21 - 6e-2 At5g28650 WRKY74 C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
L GO:0045449 Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage