Gene omics information

Query gene ID At2g30550
Gene name lipase class 3 family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6781.6At2g30550817604lipase class 3 family proteinF:triacylglycerol lipase activity;P:lipid metabolic process;C:chloroplast;PFOBMVS.X.H.G.
0.4457.2At3g51440824307strictosidine synthase family proteinF:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endoplasmic reticulum;BPMOFAS.X.H.G.
0.1710.2At1g45145841082ATTRX5encodes a cytosolic thioredoxin that reduces disulfide bridges of target proteins by the reversible formation of a disulfide bridge between two neighboring Cys residues present in the active site. Thioredoxins have been found to regulate a variety of biological reactions in prokaryotic and eukaryotic cells.S.X.H.G.
0.114.1At4g26060828712unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.030.6At1g34750840379protein phosphatase 2C, putative / PP2C, putativeF:protein serine/threonine phosphatase activity, catalytic activity;P:biological_process unknown;C:plasma membrane;PMOBFVAS.X.H.G.
0.010.2At1g13990837959unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PS.X.H.G.
0.010.2At5g54860835577integral membrane transporter family proteinF:transporter activity;P:transport;C:endomembrane system, membrane;OPBMAFS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
151.199.9GSM133758Lindsey_1-11_heart-stage-root_Rep2_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
73.299.9GSM184911Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 2GSE7641Expression analysis of root cell-types after treatment with salt
52.999.8GSM128675Underwood_1-28_DC3000-10e8-7h_Rep1_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
47.699.8GSM134422St.Clair_1-119_378_Van-0_0.30mM-SA-in-0.02%-silwet_Rep2_ATH1GSE5756Expression Level Polymorphism Project (ELP) - Van-0
44.199.8GSM184910Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 1GSE7641Expression analysis of root cell-types after treatment with salt
43.399.8GSM128660Underwood_1-13_Cor-5x10e7-10h_Rep1_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
40.599.8E-MEXP-546-raw-cel-863289424
40.399.8GSM134423St.Clair_1-120_434_Van-0_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1GSE5756Expression Level Polymorphism Project (ELP) - Van-0
40.099.8GSM142844MG001_ATH1_A25-Torres-8N1GSE6176Impact of Type III effectors on plant defense responses
38.799.8GSM134421St.Clair_1-118_348_Van-0_0.30mM-SA-in-0.02%-silwet_Rep1_ATH1GSE5756Expression Level Polymorphism Project (ELP) - Van-0
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.512e-60234At1g06800837191lipase class 3 family proteinF:triacylglycerol lipase activity;P:lipid metabolic process;C:chloroplast;PFOBMVC.G.S.X.
0.071e-242At1g51440841569lipase class 3 family proteinF:triacylglycerol lipase activity;P:lipid metabolic process;C:chloroplast;POFBMVC.G.S.X.
0.022e-138At1g47810841195F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.017e-136At5g23810832446AAP7Encodes nonfunctional amino acid transporter. AAP7 is the most distantly related member of the AAP family, a group of well characterized amino acid transporters within the ATF1 superfamily. Expression of this gene has not been detected with RNA gel blots or promoter GUS studies.C.G.S.X.
0.017e-136At5g13680831213ABO1 (ABA-OVERLY SENSITIVE 1)A subunit of Elongator, a histone acetyl transferase complex, consisting of six subunits (ELP1–ELP6), that copurifies with the elongating RNAPII in yeast and humans. Three Arabidopsis thaliana genes, encoding homologs of the yeast Elongator subunits ELP1, ELP3 (histone acetyl transferase), and ELP4 are responsible for the narrow leaf phenotype in elongata mutants and for reduced root growth that results from a decreased cell division rate.C.G.S.X.
0.013e+034At5g43620834382S-locus protein-relatedF:zinc ion binding;P:biological_process unknown;C:intracellular;MFOPC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.091e-346Glycine maxGma.12487.2.S1_atBQ094388--6e-13At1g06800lipase class 3 family proteinC.G.S.X.
0.021e+034Hordeum vulgareHVSMEb0004D21r2_atHVSMEb0004D21r2--4e+0At2g29530mitochondrial import inner membrane translocase (TIM10)C.G.S.X.
0.049e-240Oryza sativaOs05g03900009633.m02964-Lipase, class 3 family protein8e-7At1g51440lipase class 3 family proteinC.G.S.X.
0.123e-1067Populus trichocarpaPtpAffx.205738.1.S1_atpmrna11323hypothetical protein-2e-10At2g30550lipase class 3 family proteinC.G.S.X.
0.027e-136Triticum aestivumTaAffx.53241.1.S1_atCA694812--3e+0At5g60615-C.G.S.X.
0.025e-238Vitis vinifera1614724_atCB345006hypothetical protein LOC100246340-2e-1At3g01327-C.G.S.X.
0.023e-136Zea maysZmAffx.58.1.A1_atAI665082--3e+0At4g04840methionine sulfoxide reductase domain-containing protein / SeIR domain-containing proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0006629The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00043Link to KaPPA-View 4Triacylglycerol metabolism



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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