CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g30550

Gene name lipase class 3 family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.67 81.6 At2g30550 817604 lipase class 3 family protein F:triacylglycerol lipase activity;P:lipid metabolic process;C:chloroplast;PFOBMV S.X. H.G.
0.44 57.2 At3g51440 824307 strictosidine synthase family protein F:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endoplasmic reticulum;BPMOFA S.X. H.G.
0.17 10.2 At1g45145 841082 ATTRX5 encodes a cytosolic thioredoxin that reduces disulfide bridges of target proteins by the reversible formation of a disulfide bridge between two neighboring Cys residues present in the active site. Thioredoxins have been found to regulate a variety of biological reactions in prokaryotic and eukaryotic cells. S.X. H.G.
0.11 4.1 At4g26060 828712 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.03 0.6 At1g34750 840379 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:biological_process unknown;C:plasma membrane;PMOBFVA S.X. H.G.
0.01 0.2 At1g13990 837959 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P S.X. H.G.
0.01 0.2 At5g54860 835577 integral membrane transporter family protein F:transporter activity;P:transport;C:endomembrane system, membrane;OPBMAF S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
151.1 99.9 GSM133758 Lindsey_1-11_heart-stage-root_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
73.2 99.9 GSM184911 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
52.9 99.8 GSM128675 Underwood_1-28_DC3000-10e8-7h_Rep1_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
47.6 99.8 GSM134422 St.Clair_1-119_378_Van-0_0.30mM-SA-in-0.02%-silwet_Rep2_ATH1 GSE5756 Expression Level Polymorphism Project (ELP) - Van-0
44.1 99.8 GSM184910 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
43.3 99.8 GSM128660 Underwood_1-13_Cor-5x10e7-10h_Rep1_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
40.5 99.8 E-MEXP-546-raw-cel-863289424
40.3 99.8 GSM134423 St.Clair_1-120_434_Van-0_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1 GSE5756 Expression Level Polymorphism Project (ELP) - Van-0
40.0 99.8 GSM142844 MG001_ATH1_A25-Torres-8N1 GSE6176 Impact of Type III effectors on plant defense responses
38.7 99.8 GSM134421 St.Clair_1-118_348_Van-0_0.30mM-SA-in-0.02%-silwet_Rep1_ATH1 GSE5756 Expression Level Polymorphism Project (ELP) - Van-0
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.51 2e-60 234 At1g06800 837191 lipase class 3 family protein F:triacylglycerol lipase activity;P:lipid metabolic process;C:chloroplast;PFOBMV C.G. S.X.
0.07 1e-2 42 At1g51440 841569 lipase class 3 family protein F:triacylglycerol lipase activity;P:lipid metabolic process;C:chloroplast;POFBMV C.G. S.X.
0.02 2e-1 38 At1g47810 841195 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 7e-1 36 At5g23810 832446 AAP7 Encodes nonfunctional amino acid transporter. AAP7 is the most distantly related member of the AAP family, a group of well characterized amino acid transporters within the ATF1 superfamily. Expression of this gene has not been detected with RNA gel blots or promoter GUS studies. C.G. S.X.
0.01 7e-1 36 At5g13680 831213 ABO1 (ABA-OVERLY SENSITIVE 1) A subunit of Elongator, a histone acetyl transferase complex, consisting of six subunits (ELP1�ELP6), that copurifies with the elongating RNAPII in yeast and humans. Three Arabidopsis thaliana genes, encoding homologs of the yeast Elongator subunits ELP1, ELP3 (histone acetyl transferase), and ELP4 are responsible for the narrow leaf phenotype in elongata mutants and for reduced root growth that results from a decreased cell division rate. C.G. S.X.
0.01 3e+0 34 At5g43620 834382 S-locus protein-related F:zinc ion binding;P:biological_process unknown;C:intracellular;MFOP C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 1e-3 46 Glycine max Gma.12487.2.S1_at BQ094388 - - 6e-13 At1g06800 lipase class 3 family protein C.G. S.X.
0.02 1e+0 34 Hordeum vulgare HVSMEb0004D21r2_at HVSMEb0004D21r2 - - 4e+0 At2g29530 mitochondrial import inner membrane translocase (TIM10) C.G. S.X.
0.04 9e-2 40 Oryza sativa Os05g0390000 9633.m02964 - Lipase, class 3 family protein 8e-7 At1g51440 lipase class 3 family protein C.G. S.X.
0.12 3e-10 67 Populus trichocarpa PtpAffx.205738.1.S1_at pmrna11323 hypothetical protein - 2e-10 At2g30550 lipase class 3 family protein C.G. S.X.
0.02 7e-1 36 Triticum aestivum TaAffx.53241.1.S1_at CA694812 - - 3e+0 At5g60615 - C.G. S.X.
0.02 5e-2 38 Vitis vinifera 1614724_at CB345006 hypothetical protein LOC100246340 - 2e-1 At3g01327 - C.G. S.X.
0.02 3e-1 36 Zea mays ZmAffx.58.1.A1_at AI665082 - - 3e+0 At4g04840 methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006629 The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00043 Triacylglycerol metabolism

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage