CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g30500

Gene name kinase interacting family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.25 22.6 At2g30500 817600 kinase interacting family protein F:unknown;P:unknown;C:unknown;MOBFPAV S.X. H.G.
0.57 73.8 At5g10720 830938 AHK5 (ARABIDOPSIS HISTIDINE KINASE 5) member of Histidine Kinase S.X. H.G.
0.44 57.2 At1g11000 837643 MLO4 (MILDEW RESISTANCE LOCUS O 4) A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO4 belongs to the clade I, with AtMLO11 and AtMLO14. The gene is expressed during early seedling growth, in roots and lateral root primordia, in flower and fruit abscission zone, in vascular system of root, cotyledons and young leaves, it was not expressed in mature rosette leaves, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s). S.X. H.G.
0.43 55.3 At1g53180 841752 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMF S.X. H.G.
0.20 14.4 At2g24610 816997 ATCNGC14 member of Cyclic nucleotide gated channel family S.X. H.G.
0.17 10.2 At5g14000 831248 anac084 (Arabidopsis NAC domain containing protein 84) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P S.X. H.G.
0.07 1.9 At1g12160 837768 flavin-containing monooxygenase family protein / FMO family protein F:NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity;P:biological_process unknown;C:cellular_component unknown;BOMFPA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
81.8 99.9 GSM184516 Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
66.4 99.8 E-MEXP-1443-raw-cel-1581869515
51.5 99.8 GSM184517 Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
48.0 99.8 GSM311284 Laser capture microdissected (LCM) general seed coat at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
47.9 99.8 GSM311283 Laser capture microdissected (LCM) general seed coat at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
43.9 99.8 E-MEXP-1443-raw-cel-1581869573
38.5 99.8 GSM311286 Laser capture microdissected (LCM) whole seed sections at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
37.7 99.7 GSM184912 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
37.5 99.7 GSM184911 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
35.8 99.7 GSM184907 Arabidopsis, root cells, epidermis and lateral root cap, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 5e-8 59 At4g02710 828199 kinase interacting family protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOBFPAV C.G. S.X.
0.02 1e-5 52 At1g03080 838350 - F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOBFPAV C.G. S.X.
0.03 2e-4 48 At3g10880 820258 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV C.G. S.X.
0.02 1e-2 42 At5g58320 835944 kinase interacting protein-related F:unknown;P:biological_process unknown;C:unknown;MOBFPAV C.G. S.X.
0.01 2e-1 38 At4g36210 829778 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FMOBPA C.G. S.X.
0.01 2e-1 38 At4g03550 825650 ATGSL05 (GLUCAN SYNTHASE-LIKE 5) Encodes a callose synthase that is required for wound and papillary callose formation in response to fungal pathogens Erysiphe and Blumeria. Mutants are resistant to P. parasitica and exhibit an exaggerated PR1 response.Contributes to PAMP-induced basal defense. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e-1 38 Glycine max GmaAffx.90548.1.S1_x_at CF806273 - - 2e-1 At1g54200 unknown protein C.G. S.X.
0.02 2e+0 34 Hordeum vulgare HA11C06u_at HA11C06u - - 4e+0 At3g11570 unknown protein C.G. S.X.
0.04 3e-8 61 Oryza sativa Os01g0168100 AK121992.1 - Prefoldin family protein 1e-17 At1g64390 AtGH9C2 (Arabidopsis thaliana glycosyl hydrolase 9C2) C.G. S.X.
0.06 5e-6 54 Populus trichocarpa PtpAffx.211376.1.S1_x_at pmrna22297 hypothetical protein - 4e-16 At5g58320 kinase interacting protein-related C.G. S.X.
0.07 3e-3 44 Triticum aestivum TaAffx.81778.1.S1_at CA682071 - - 1e-3 At2g30500 kinase interacting family protein C.G. S.X.
0.04 1e-3 44 Vitis vinifera 1616721_at CF608439 hypothetical protein LOC100260478 - 1e+0 At5g08150 unknown protein C.G. S.X.
0.02 5e+0 32 Zea mays Zm.6653.1.S1_at CA404358 hypothetical protein LOC100274393 - 6e-4 At5g54680 ILR3 (iaa-leucine resistant3) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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