Gene omics information

Query gene ID At2g30490
Gene name C4H (CINNAMATE-4-HYDROXYLASE)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4761.2At2g30490817599C4H (CINNAMATE-4-HYDROXYLASE)Encodes a cinnamate-4-hydroxylase.S.X.H.G.
0.8089.8At1g28680839768transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFS.X.H.G.
0.7385.5At2g40890818686CYP98A3 (cytochrome P450, family 98, subfamily A, polypeptide 3)encodes coumarate 3-hydroxylase (C3H), a P450-dependent monooxygenase. Involved in lignin biosynthesis and flavonoid biosynthesis. Also affects the biosynthesis of coumarins such as scopoletin and scopolin as a branching-out-pathway from the phenylpropanoid acid level.S.X.H.G.
0.6781.6At1g52760841709esterase/lipase/thioesterase family proteinF:catalytic activity;P:unknown;C:cellular_component unknown;BPOMFVAS.X.H.G.
0.6781.6At2g37040818280pal1 (Phe ammonia lyase 1)encodes a protein similar to phenylalanine ammonia-lyaseS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
23.699.6E-MEXP-1443-raw-cel-1581869921
19.599.6E-MEXP-265-raw-cel-414617695
19.499.6E-NASC-76-raw-cel-1359878976
19.199.6E-MEXP-828-raw-cel-1156922684
17.699.5GSM226551Slice9JWGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular function
17.199.5E-NASC-76-raw-cel-1359878900
16.399.5E-NASC-76-raw-cel-1359879158
16.399.5GSM142839MG001_ATH1_A18-Torres-6N6GSE6176Impact of Type III effectors on plant defense responses
15.899.5GSM270866Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep1GSE10719Response of Arabidopsis cell culture to phytoprostane A1
15.399.4E-MEXP-265-raw-cel-414618291
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.022e-448At2g40890818686CYP98A3 (cytochrome P450, family 98, subfamily A, polypeptide 3)encodes coumarate 3-hydroxylase (C3H), a P450-dependent monooxygenase. Involved in lignin biosynthesis and flavonoid biosynthesis. Also affects the biosynthesis of coumarins such as scopoletin and scopolin as a branching-out-pathway from the phenylpropanoid acid level.C.G.S.X.
0.025e-240At4g37850829941basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFOBC.G.S.X.
0.015e-240At3g48290823987CYP71A24putative cytochrome P450C.G.S.X.
0.015e-240At1g74550843796CYP98A9member of CYP98AC.G.S.X.
0.022e-138At5g43300834348glycerophosphodiester phosphodiesterase/ phosphoric diester hydrolaseF:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:cellular_component unknown;MBOFPAVC.G.S.X.
0.012e-138At2g22740816804SUVH6Encodes a SU(VAR)3-9 homolog, a methyltransferase involved in histone methylation. The protein was shown to bind to methylated cytosines of CG, CNG and CNN motifs but has a preference for the latter two. This is a member of a subfamily of SET proteins that shares a conserved SRA domain.C.G.S.X.
0.012e-138At2g42370818838unknown proteinF:unknown;P:unknown;C:cellular_component unknown;MOPBFAC.G.S.X.
0.022e-138At1g53100841744acetylglucosaminyltransferaseF:acetylglucosaminyltransferase activity;P:carbohydrate biosynthetic process;C:membrane;MPBVOC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.329e-23109Glycine maxGma.3881.1.S1_atX92437.1--8e-23At2g30490C4H (CINNAMATE-4-HYDROXYLASE)C.G.S.X.
0.213e-1479Hordeum vulgareContig3441_atContig3441--7e-14At2g30490C4H (CINNAMATE-4-HYDROXYLASE)C.G.S.X.
0.223e-1791Oryza sativaOs01g08200009629.m05941-Trans-cinnamate 4-monooxygenase (EC 1.14.13.11)(Cinnamic acid 4- hydroxylase) (CA4H) (C4H) (P450C4H)(Cytochrome P450 73)1e-17At2g30490C4H (CINNAMATE-4-HYDROXYLASE)C.G.S.X.
0.281e-34149Populus trichocarpaPtp.336.1.S1_atCK088430cytochrome P450-5e-35At2g30490C4H (CINNAMATE-4-HYDROXYLASE)C.G.S.X.
0.224e-27123Triticum aestivumTa.9643.1.S1_x_atCK169303--6e-27At2g30490C4H (CINNAMATE-4-HYDROXYLASE)C.G.S.X.
0.192e-48192Vitis vinifera1616191_s_atCB971061hypothetical protein LOC100253493-6e-48At2g30490C4H (CINNAMATE-4-HYDROXYLASE)C.G.S.X.
0.154e-1995Zea maysZm.7134.1.S1_atCF634276hypothetical protein LOC100272801 /// trans-cinnamate 4-monooxygenase-1e-18At2g30490C4H (CINNAMATE-4-HYDROXYLASE)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0009555The process whose specific outcome is the progression of the pollen grain over time, from its formation to the mature structure. The process begins with the meiosis of the microsporocyte to form four haploid microspores. The nucleus of each microspore then divides by mitosis to form a two-celled organism, the pollen grain, that contains a tube cell as well as a smaller generative cell. The pollen grain is surrounded by an elaborate cell wall. In some species, the generative cell immediately divides again to give a pair of sperm cells. In most flowering plants, however this division takes place later, in the tube that develops when a pollen grain germinates.
XGO:0009698The chemical reactions and pathways involving aromatic derivatives of trans-cinnamic acid.
XGO:0009808The chemical reactions and pathways involving lignins, a class of polymers of phenylpropanoid units.
XGO:0032502A biological process whose specific outcome is the progression of an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition.
XGO:0040007The increase in size or mass of an entire organism, a part of an organism or a cell.
XGO:0009416A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light.
XGO:0009611A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism.
SGO:0009699The chemical reactions and pathways resulting in the formation of aromatic derivatives of trans-cinnamic acid.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00061Link to KaPPA-View 4Flavonoids biosynthesis
00064Link to KaPPA-View 4The cinnamate-monolignol pathway/sinapoyl ester biosynthesis
00347Link to KaPPA-View 4Cytochrome P450
00420Link to KaPPA-View 4Ubiquinone biosynthesis



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
00360Link to KEGG PATHWAYPhenylalanine metabolism
00940Link to KEGG PATHWAYPhenylpropanoid biosynthesis
00941Link to KEGG PATHWAYFlavonoid biosynthesis
00945Link to KEGG PATHWAYStilbenoid, diarylheptanoid and gingerol biosynthesis
01061Link to KEGG PATHWAYBiosynthesis of phenylpropanoids
01063Link to KEGG PATHWAYBiosynthesis of alkaloids derived from shikimate pathway
01100Link to KEGG PATHWAYMetabolic pathways
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