Gene omics information

Query gene ID At2g30240
Gene name ATCHX13
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5773.8At2g30240817574ATCHX13Encodes a plasma membrane localized potassium transporter.S.X.H.G.
0.9195.6At1g51915841619cryptdin protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
0.7586.9At5g39870833984unknown proteinF:unknown;P:unknown;C:endomembrane system;POBMAS.X.H.G.
0.6781.6At1g16380838208ATCHX1member of Putative Na+/H+ antiporter familyS.X.H.G.
0.4862.5At2g20470816567kinaseF:kinase activity;P:protein amino acid phosphorylation;C:unknown;MOPFBVAS.X.H.G.
0.4253.9At3g23270821906regulator of chromosome condensation (RCC1) family proteinF:chromatin binding, phosphoinositide binding, Ran GTPase binding;P:signal transduction;C:cellular_component unknown;MOPBFAVS.X.H.G.
0.3338.1At3g28770822509unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MOBFPVAS.X.H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
509.4100.0GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
279.0100.0GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular function
122.399.9GSM142736DH001_ATH1_A3-TCP1GSE6162Transcriptome analysis of Arabidopsis microgametogenesis
116.499.9GSM131593ATGE_36_CGSE5632AtGenExpress: Developmental series (flowers and pollen)
113.999.9GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.425e-40167At1g06970837207CHX14 (CATION/HYDROGEN EXCHANGER 14)member of Putative Na+/H+ antiporter familyC.G.S.X.
0.018e-240At1g08150837336ATCHX5member of Putative Na+/H+ antiporter familyC.G.S.X.
0.018e-240At1g31480840038SGR2 (SHOOT GRAVITROPISM 2)encodes a novel protein that may be part of a gene family represented by bovine phosphatidic acid-preferring phospholipase A1 (PA-PLA1)containing a putative transmembrane domain. SGR2 is involved in the formation and function of the vacuole.C.G.S.X.
0.013e-138At1g42990840897ATBZIP60 (BASIC REGION/LEUCINE ZIPPER MOTIF 60)AtbZIP60 consists of a bZIP DNA binding domain followed by a putative transmembrane domain. GFP fusions containing the first 260 amino acids (AtbZIP60deltaC) are nuclear-localized. AtbZIP60 is upregulated by the addition of tunicamycin (ER stress response inductor), DTT (inhibitor of disulfide bond formation) and azetin-2-carboxylate (proline analog perturbing protein structure). Upon ER stress the protein is proteolyzed and the soluble part is translocalized into the nucleus. AtbZIP60deltaC can activate the promoters of the ER chaperones BiP1, BiP2 and BiP3 and CNX1 and CNX2 via binding to the ER stress response element (ERSE) and the plant unfolded protein response element(P-UPRE). It can also activate its own transcription.C.G.S.X.
0.011e+036At5g45610834601unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.011e+036At5g23250832389succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putativeF:succinate-CoA ligase (ADP-forming) activity, succinate-CoA ligase (GDP-forming) activity, binding, ATP citrate synthase activity, catalytic activity;P:metabolic process;C:mitochondrion;OBMAFPC.G.S.X.
0.011e+036At5g58010835913basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFOC.G.S.X.
0.011e+036At2g27210817263kelch repeat-containing serine/threonine phosphoesterase family proteinF:hydrolase activity, manganese ion binding, protein serine/threonine phosphatase activity, phosphoprotein phosphatase activity, iron ion binding;P:biological_process unknown;C:cytosol, plasma membrane;MOPFBAVC.G.S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.012e+036Glycine maxGma.737.1.A1_atBE658904--3e+0At3g01970WRKY45C.G.S.X.
0.012e-138Hordeum vulgareContig21378_atContig21378--1e-1At3g24070zinc knuckle (CCHC-type) family proteinC.G.S.X.
0.011e+134Oryza sativaOs11g04631009639.m02464--1e+0At5g46730glycine-rich proteinC.G.S.X.
0.011e-140Populus trichocarpaPtpAffx.216503.1.S1_atpmrna31314hypothetical protein-1e-11At2g19790clathrin adaptor complex small chain family proteinC.G.S.X.
0.015e+034Triticum aestivumTaAffx.41681.1.S1_atCK214846--7e-3At1g29220transcriptional regulator family proteinC.G.S.X.
0.016e+032Vitis vinifera1621060_atCF517443--1e+0At2g25185-C.G.S.X.
0.015e-136Zea maysZm.13850.1.A1_atAJ295133.1--8e-1At5g48220indole-3-glycerol phosphate synthase, putativeC.G.S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0006813The directed movement of potassium ions (K+) into, out of, within or between cells.
SGO:0006812The directed movement of cations, atoms or small molecules with a net positive charge, into, out of, within or between cells.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage