CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g30240

Gene name ATCHX13

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.57 73.8 At2g30240 817574 ATCHX13 Encodes a plasma membrane localized potassium transporter. S.X. H.G.
0.91 95.6 At1g51915 841619 cryptdin protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.75 86.9 At5g39870 833984 unknown protein F:unknown;P:unknown;C:endomembrane system;POBMA S.X. H.G.
0.67 81.6 At1g16380 838208 ATCHX1 member of Putative Na+/H+ antiporter family S.X. H.G.
0.48 62.5 At2g20470 816567 kinase F:kinase activity;P:protein amino acid phosphorylation;C:unknown;MOPFBVA S.X. H.G.
0.42 53.9 At3g23270 821906 regulator of chromosome condensation (RCC1) family protein F:chromatin binding, phosphoinositide binding, Ran GTPase binding;P:signal transduction;C:cellular_component unknown;MOPBFAV S.X. H.G.
0.33 38.1 At3g28770 822509 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MOBFPVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
509.4 100.0 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
449.7 100.0 E-MEXP-1138-raw-cel-1432773258
385.2 100.0 E-MEXP-1138-raw-cel-1432773290
356.2 100.0 E-MEXP-1138-raw-cel-1432773322
279.0 100.0 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
126.6 99.9 E-MEXP-1138-raw-cel-1432773066
122.3 99.9 GSM142736 DH001_ATH1_A3-TCP1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
116.4 99.9 GSM131593 ATGE_36_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
113.9 99.9 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
103.8 99.9 E-MEXP-1138-raw-cel-1432773034
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.42 5e-40 167 At1g06970 837207 CHX14 (CATION/HYDROGEN EXCHANGER 14) member of Putative Na+/H+ antiporter family C.G. S.X.
0.01 8e-2 40 At1g08150 837336 ATCHX5 member of Putative Na+/H+ antiporter family C.G. S.X.
0.01 8e-2 40 At1g31480 840038 SGR2 (SHOOT GRAVITROPISM 2) encodes a novel protein that may be part of a gene family represented by bovine phosphatidic acid-preferring phospholipase A1 (PA-PLA1)containing a putative transmembrane domain. SGR2 is involved in the formation and function of the vacuole. C.G. S.X.
0.01 3e-1 38 At1g42990 840897 ATBZIP60 (BASIC REGION/LEUCINE ZIPPER MOTIF 60) AtbZIP60 consists of a bZIP DNA binding domain followed by a putative transmembrane domain. GFP fusions containing the first 260 amino acids (AtbZIP60deltaC) are nuclear-localized. AtbZIP60 is upregulated by the addition of tunicamycin (ER stress response inductor), DTT (inhibitor of disulfide bond formation) and azetin-2-carboxylate (proline analog perturbing protein structure). Upon ER stress the protein is proteolyzed and the soluble part is translocalized into the nucleus. AtbZIP60deltaC can activate the promoters of the ER chaperones BiP1, BiP2 and BiP3 and CNX1 and CNX2 via binding to the ER stress response element (ERSE) and the plant unfolded protein response element(P-UPRE). It can also activate its own transcription. C.G. S.X.
0.01 1e+0 36 At5g45610 834601 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 1e+0 36 At5g23250 832389 succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative F:succinate-CoA ligase (ADP-forming) activity, succinate-CoA ligase (GDP-forming) activity, binding, ATP citrate synthase activity, catalytic activity;P:metabolic process;C:mitochondrion;OBMAFP C.G. S.X.
0.01 1e+0 36 At5g58010 835913 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFO C.G. S.X.
0.01 1e+0 36 At2g27210 817263 kelch repeat-containing serine/threonine phosphoesterase family protein F:hydrolase activity, manganese ion binding, protein serine/threonine phosphatase activity, phosphoprotein phosphatase activity, iron ion binding;P:biological_process unknown;C:cytosol, plasma membrane;MOPFBAV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 2e+0 36 Glycine max Gma.737.1.A1_at BE658904 - - 3e+0 At3g01970 WRKY45 C.G. S.X.
0.01 2e-1 38 Hordeum vulgare Contig21378_at Contig21378 - - 1e-1 At3g24070 zinc knuckle (CCHC-type) family protein C.G. S.X.
0.01 1e+1 34 Oryza sativa Os11g0463100 9639.m02464 - - 1e+0 At5g46730 glycine-rich protein C.G. S.X.
0.01 1e-1 40 Populus trichocarpa PtpAffx.216503.1.S1_at pmrna31314 hypothetical protein - 1e-11 At2g19790 clathrin adaptor complex small chain family protein C.G. S.X.
0.01 5e+0 34 Triticum aestivum TaAffx.41681.1.S1_at CK214846 - - 7e-3 At1g29220 transcriptional regulator family protein C.G. S.X.
0.01 6e+0 32 Vitis vinifera 1621060_at CF517443 - - 1e+0 At2g25185 - C.G. S.X.
0.01 5e-1 36 Zea mays Zm.13850.1.A1_at AJ295133.1 - - 8e-1 At5g48220 indole-3-glycerol phosphate synthase, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0006813 The directed movement of potassium ions (K+) into, out of, within or between cells.
S GO:0006812 The directed movement of cations, atoms or small molecules with a net positive charge, into, out of, within or between cells.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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