CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g30130

Gene name ASL5

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.35 41.6 At2g30130 817565 ASL5 Overexpression/activation tagged allele has epinastic leaves, reduced apical dominance and is sterile. Gene is similar to asymmetric leaves (AS)/lateral organ boundary (LOB) genes which repress KNOX gene expression. S.X. H.G.
0.67 81.6 At1g16950 838266 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.67 81.6 At1g25340 839118 MYB116 (myb domain protein 116) putative transcription factor (MYB116) S.X. H.G.
0.57 73.8 At1g68320 843161 MYB62 (myb domain protein 62) putative transcription factor: R2R3-MYB transcription family S.X. H.G.
0.17 10.2 At4g18350 827562 NCED2 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 2) Encodes 9-cis-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. The expression of this gene declines during the first 12h of imbibition. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
612.4 100.0 GSM133968 Birnbaum_1-19_LRC-1_Rep1_ATH1 GSE5749 A gene expression map of the Arabidopsis root
536.6 100.0 E-MEXP-1474-raw-cel-1593932865
529.4 100.0 E-MEXP-1474-raw-cel-1593932801
469.2 100.0 E-MEXP-1474-raw-cel-1593932929
333.6 100.0 GSM133969 Birnbaum_1-20_LRC-2_Rep2_ATH1 GSE5749 A gene expression map of the Arabidopsis root
280.6 100.0 GSM133973 Birnbaum_1-3_src5-3_Rep3_ATH1 GSE5749 A gene expression map of the Arabidopsis root
187.3 100.0 E-MEXP-1474-raw-cel-1593932769
173.7 100.0 GSM184909 Arabidopsis, root cells, epidermis and lateral root cap, 140 mM NaCl, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
150.9 99.9 E-MEXP-1474-raw-cel-1593932897
124.4 99.9 GSM184911 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.10 1e-3 44 At3g26660 822278 LBD24 (LOB DOMAIN-CONTAINING PROTEIN 24) F:unknown;P:biological_process unknown;C:membrane;P C.G. S.X.
0.10 1e-3 44 At3g26620 822274 LBD23 (LOB DOMAIN-CONTAINING PROTEIN 23) F:unknown;P:biological_process unknown;C:unknown;P C.G. S.X.
0.10 1e-3 44 At2g30340 817584 LBD13 (LOB DOMAIN-CONTAINING PROTEIN 13) F:molecular_function unknown;P:biological_process unknown;C:membrane;PMOFVBA C.G. S.X.
0.05 5e-3 42 At3g11090 820280 LBD21 (LOB DOMAIN-CONTAINING PROTEIN 21) F:unknown;P:biological_process unknown;C:unknown;P C.G. S.X.
0.02 2e-2 40 At1g23480 838956 ATCSLA03 (CELLULOSE SYNTHASE-LIKE A3) encodes a gene similar to cellulose synthase C.G. S.X.
0.03 7e-2 38 At5g62210 836342 embryo-specific protein-related F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;MPOFVBA C.G. S.X.
0.02 7e-2 38 At2g20370 816556 MUR3 (MURUS 3) Encodes a xyloglucan galactosyltransferase located in the membrane of Golgi stacks that is involved in the biosynthesis of fucose. It is also involved in endomembrane organization. It is suggested that it is a dual-function protein that is responsible for actin organization and the synthesis of cell wall materials. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.43 2e-31 137 Glycine max GmaAffx.7695.2.A1_at BU549572 - - 9e-32 At2g30130 ASL5 C.G. S.X.
0.04 2e+0 32 Hordeum vulgare HK04G17r_at HK04G17r - - 2e+0 At2g30130 ASL5 C.G. S.X.
0.13 2e-4 48 Oryza sativa Os05g0346800 9633.m02554 - LOB domain protein 15 9e-5 At2g30130 ASL5 C.G. S.X.
0.51 4e-32 139 Populus trichocarpa PtpAffx.204782.1.S1_s_at pmrna9417 hypothetical protein - 2e-32 At2g30130 ASL5 C.G. S.X.
0.04 7e-2 38 Triticum aestivum TaAffx.5829.2.A1_at CA612389 - - 6e-2 At2g30130 ASL5 C.G. S.X.
0.11 1e+0 32 Vitis vinifera 1618714_at CD713471 hypothetical protein LOC100251929 - 6e-37 At2g40470 LBD15 (LOB DOMAIN-CONTAINING PROTEIN 15) C.G. S.X.
0.04 2e+0 32 Zea mays ZmAffx.1106.1.A1_at AW216267 - - 3e-3 At1g60550 ECHID (ENOYL-COA HYDRATASE/ISOMERASE D) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009965 The process by which the anatomical structures of the leaf are generated and organized. Morphogenesis pertains to the creation of form.
X GO:0010016 The process by which the anatomical structures of the shoot are generated and organized. Morphogenesis pertains to the creation of form. The shoot is the part of a seed plant body that is usually above ground.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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