Gene omics information

Query gene ID At2g30100
Gene name ubiquitin family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.1811.4At2g30100817561ubiquitin family proteinF:protein binding;P:protein modification process;C:chloroplast;MPBOFAVS.X.H.G.
0.3338.1At3g19740821511ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide bindingF:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:biological_process unknown;C:mitochondrion;BOMFPAVS.X.H.G.
0.2014.4At1g03910839371-F:unknown;P:unknown;C:unknown;MOFPBVAS.X.H.G.
0.092.8At5g18580831976FASS (FASS 1)fass mutants have aberrant cell shapes due to defects in arrangement of cortical microtubules. Encodes a protein highly conserved in higher plants and similar in its C-terminal part to B' regulatory subunits of type 2A protein phosphatases. Interacts with an Arabidopsis type A subunit of PP2A in the yeast two-hybrid system.S.X.H.G.
0.092.8At5g64610836582HAM1 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 1)Encodes an enzyme with histone acetyltransferase activity. HAM1 primarily acetylate histone H4, but also display some ability to acetylate H3. Prior acetylation of lysine 5 on histone H4 reduces radioactive acetylation by either HAM1. HAM1 acetylates histone H4 lysine 5.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
28.199.7GSM133758Lindsey_1-11_heart-stage-root_Rep2_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
17.799.5GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
17.599.5GSM242954Mock day 1 (day1E2)GSE9605Target genes of AGAMOUS during early flower development in Arabidopsis
14.299.4GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular function
13.899.4GSM242958Mock day 3 (day3E2)GSE9605Target genes of AGAMOUS during early flower development in Arabidopsis
13.099.4GSM242955Steroid day 1 (day1D1)GSE9605Target genes of AGAMOUS during early flower development in Arabidopsis
12.499.3GSM242959Steroid day 3 (day3D1)GSE9605Target genes of AGAMOUS during early flower development in Arabidopsis
12.399.3GSM242960Steroid day 3 (day3D2)GSE9605Target genes of AGAMOUS during early flower development in Arabidopsis
12.199.3GSM242957Mock day 3 (day3E1)GSE9605Target genes of AGAMOUS during early flower development in Arabidopsis
11.399.3GSM242956Steroid day 1 (day1D2)GSE9605Target genes of AGAMOUS during early flower development in Arabidopsis
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.019e-240At5g61380836259TOC1 (TIMING OF CAB EXPRESSION 1)Pseudo response regulator involved in the generation of circadian rhythms. TOC1 appears to shorten the period of circumnutation speed. TOC1 contributes to the plant fitness (carbon fixation, biomass) by influencing the circadian clock period. PRR3 may increase the stability of TOC1 by preventing interactions between TOC1 and the F-box protein ZTL. Expression of TOC1 is correlated with rhythmic changes in chromatin organization.C.G.S.X.
0.019e-240At4g37750829931ANT (AINTEGUMENTA)ANT is required for control of cell proliferation and encodes a putative transcriptional regulator similar to AP2. Loss of function alleles have reduced fertility, abnormal ovules and abnormal lateral organs. Expressed specifically in the chalaza and in floral organ primordia.C.G.S.X.
0.019e-240At4g18830827617OFP5 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 5)Member of the ovate protein family.Interacts with BLH1 and KNAT3. Regulates the subcellular localization of BLH1.C.G.S.X.
0.019e-240At3g51720824335unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBPFAVC.G.S.X.
0.013e-138At5g23720832437PHS1 (PROPYZAMIDE-HYPERSENSITIVE 1)Encodes a protein tyrosine phosphatase Propyzamide-Hypersensitive 1 (PHS1). One of the mutant alleles, phs1-1, is hypersensitive to the microtubule-destabilizing drug propyzamide, suggesting that PHS1 may be involved in phosphorylation cascades that control the dynamics of cortical microtubules in plant cells. A second allele, phs1-3, is hypersensitive to abscisic acid, indicating a possible involvement of PHS1 in ABA signalling.C.G.S.X.
0.013e-138At5g10510830915AIL6 (AINTEGUMENTA-LIKE 6)Encodes an AP2-domain transcription factor involved in root stem cell identity and root development.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.015e-138Glycine maxGma.17352.1.S1_atAW706295--1e+0At1g61940AtTLP4 (TUBBY LIKE PROTEIN 4)C.G.S.X.
0.011e-242Hordeum vulgarerbags15n22_atrbags15n22--1e+0At1g63270ATNAP10C.G.S.X.
0.017e-138Oryza sativaOs06g02130009634.m01072--8e-2At2g29125RTFL2 (ROTUNDIFOLIA LIKE 2)C.G.S.X.
0.141e-23113Populus trichocarpaPtpAffx.204787.1.S1_atpmrna9435hypothetical protein-4e-24At2g30100ubiquitin family proteinC.G.S.X.
0.032e-242Triticum aestivumTa.9972.1.S1_atBQ161449--1e-2At2g30100ubiquitin family proteinC.G.S.X.
0.012e+034Vitis vinifera1614488_atCF415747hypothetical protein LOC100243290-4e-16At1g23380KNAT6C.G.S.X.
0.036e-446Zea maysZm.9135.1.A1_atBQ538300small GTP-binding protein domain-7e-4At2g30100ubiquitin family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0006464The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification).
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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