CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g29995

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At2g29995 817550 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.78 88.6 At1g78000 844135 SULTR1 Encodes a sulfate transporter that can restore sulfate uptake capacity of a yeast mutant lacking sulfate transporter genes. S.X. H.G.
0.78 88.6 At2g44380 819045 DC1 domain-containing protein F:unknown;P:unknown;C:unknown;PMO S.X. H.G.
0.78 88.6 At5g43350 834353 PHT1 Encodes an inorganic phosphate transporter. Mutants display enhanced arsenic accumulation. S.X. H.G.
0.75 86.9 At2g21045 816639 - F:unknown;P:aging;C:unknown;BOPAFM S.X. H.G.
0.74 86.1 At2g42350 818836 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV S.X. H.G.
0.64 78.9 At3g18560 821387 unknown protein F:unknown;P:unknown;C:unknown;P S.X. H.G.
0.55 70.6 At1g31885 840079 transporter F:transporter activity;P:transport;C:integral to membrane, membrane;BPOMFAV S.X. H.G.
0.52 67.4 At2g44010 819006 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.48 62.5 At1g29280 839802 WRKY65 member of WRKY Transcription Factor; Group II-e S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
74.2 99.9 E-MEXP-828-raw-cel-1156922296
60.4 99.8 E-MEXP-828-raw-cel-1156922485
58.7 99.8 E-MEXP-828-raw-cel-1156922572
55.8 99.8 E-MEXP-828-raw-cel-1156922794
55.3 99.8 E-MEXP-828-raw-cel-1156922318
53.7 99.8 E-MEXP-828-raw-cel-1156922731
51.8 99.8 E-MEXP-828-raw-cel-1156922772
50.1 99.8 GSM265474 Arabidopsis, whole roots, -Fe, 72 hour, rep 2 GSE10502 Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
48.9 99.8 E-MEXP-828-raw-cel-1156922923
47.2 99.8 GSM75520 slr-1 2h NAA replicate 2 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.13 4e-7 54 At1g07175 6241425 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.05 6e-3 40 At3g61260 825298 DNA-binding family protein / remorin family protein F:binding;P:biological_process unknown;C:plasma membrane, vacuole;OBMFPVA C.G. S.X.
0.05 1e-1 36 At5g52730 835350 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;POBMFV C.G. S.X.
0.07 1e-1 36 At3g03850 821111 auxin-responsive protein, putative F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO C.G. S.X.
0.01 4e-1 34 At5g44180 834441 homeobox transcription factor, putative F:transcription factor activity;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;MOBFPVA C.G. S.X.
0.03 4e-1 34 At4g25900 828696 aldose 1-epimerase family protein F:carbohydrate binding, isomerase activity, aldose 1-epimerase activity, catalytic activity;P:galactose metabolic process, carbohydrate metabolic process;C:cell wall, plasma membrane, plant-type cell wall;BOPFM C.G. S.X.
0.02 4e-1 34 At1g54940 841934 PGSIP4 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 4) F:transferase activity, transferring glycosyl groups;P:biosynthetic process;C:endomembrane system;PMFVBO C.G. S.X.
0.03 2e+0 32 At5g07000 830591 ST2B (SULFOTRANSFERASE 2B) Encodes a member of the sulfotransferase family of proteins. Although it has 85% amino acid identity with ST2A (At5g07010), this protein is not able to transfer a sulfate group to 11- or 12-hydroxyjasmonic acid in vitro. It may be able to act on structurally related jasmonates. C.G. S.X.
0.01 2e+0 32 At5g13990 831247 ATEXO70C2 (exocyst subunit EXO70 family protein C2) A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 1e-1 36 Glycine max GmaAffx.603.1.S1_at BE556509 - - 1e-2 At1g22510 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.04 8e-1 32 Hordeum vulgare HVSMEl0002B17r2_at HVSMEl0002B17r2 - - 7e-2 At5g22200 harpin-induced family protein / HIN1 family protein / harpin-responsive family protein C.G. S.X.
0.07 8e-1 34 Oryza sativa OsAffx.12073.1.S1_at - - - 0 C.G. S.X.
0.04 2e+0 32 Populus trichocarpa PtpAffx.223252.1.S1_at pmrna41155 hypothetical protein - 6e-2 At1g46264 AT-HSFB4 C.G. S.X.
0.08 2e+0 32 Triticum aestivum TaAffx.8597.1.S1_at CA622996 - - 1e+0 At5g48950 thioesterase family protein C.G. S.X.
0.06 2e+0 30 Vitis vinifera 1618121_at CF213691 - - 6e-4 At4g23020 unknown protein C.G. S.X.
0.06 3e+0 30 Zea mays Zm.7138.2.S1_a_at AY106462.1 cytidine deaminase-like /// cytidine deaminase-like - 2e-20 At5g28050 cytidine/deoxycytidylate deaminase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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