Gene omics information

Query gene ID At2g29990
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6075.7At2g29990817549NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2)F:NADH dehydrogenase activity, oxidoreductase activity, FAD binding;P:unknown;C:intrinsic to mitochondrial inner membrane;BOFPAMS.X.H.G.
0.8089.8At5g04930830375ALA1 (aminophospholipid ATPase1)Encodes a putative aminophospholipid translocase (p-type ATPase) involved in chilling response.S.X.H.G.
0.7586.9At5g61010836222ATEXO70E2 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN E2)A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.S.X.H.G.
0.3541.6At5g48380834892leucine-rich repeat family protein / protein kinase family proteinF:protein binding, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;PMOBFVAS.X.H.G.
0.2217.5At3g12740820456ALIS1 (ALA-INTERACTING SUBUNIT 1)Physically interacts with ALA3, and is required for the phospholipid translocase activity of ALA3.S.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
42.599.8GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
36.999.7GSM128662Underwood_1-15_Cor-5x10e7-10h_Rep3_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
36.899.7GSM134404St.Clair_1-101_324_Tsu-1_0.30mM-SA-in-0.02%-silwet_Rep2_ATH1GSE5755Expression Level Polymorphism Project (ELP) - Tsu-1
34.999.7GSM134350St.Clair_1-11_333_Col-0_0.30mM-SA-in-0.02%-silwet_Rep2_ATH1GSE5752Expression Level Polymorphism Project (ELP) - Col-0
32.699.7GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
31.999.7GSM134386St.Clair_1-47_334_Est_0.30mM-SA-in-0.02%-silwet_Rep2_ATH1GSE5754Expression Level Polymorphism Project (ELP) - Est
30.799.7GSM134351St.Clair_1-12_407_Col-0_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1GSE5752Expression Level Polymorphism Project (ELP) - Col-0
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.740821At1g07180837229NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1)Internal NAD(P)H dehydrogenase in mitochondria. The predicted protein sequence has high homology with other designated NAD(P)H DHs from microorganisms; the capacity for matrix NAD(P)H oxidation via the rotenone-insensitive pathway is significantly reduced in the Atndi1 mutant plant line; the in vitro translation product of AtNDI1 is imported into isolated mitochondria and located on the inside of the inner membrane.C.G.S.X.
0.038e-756At4g21490828234NDB3F:NADH dehydrogenase activity;P:unknown;C:unknown;BOFPAMC.G.S.X.
0.028e-446At2g20800816609NDB4 (NAD(P)H dehydrogenase B4)F:NADH dehydrogenase activity;P:unknown;C:extrinsic to mitochondrial inner membrane, mitochondrion, plastid;BOFPAMC.G.S.X.
0.023e-344At4g05020825844NDB2 (NAD(P)H dehydrogenase B2)F:disulfide oxidoreductase activity, oxidoreductase activity, FAD binding;P:unknown;C:extrinsic to mitochondrial inner membrane, mitochondrion;BOFPAMC.G.S.X.
0.025e-240At5g282883770787-Encodes a defensin-like (DEFL) family protein.C.G.S.X.
0.012e-138At5g54650835554Fh5 (FORMIN HOMOLOGY5)Encodes a protein with similarity to formins that is involved in cytokinesis. Loss of function mutations exhibit delayed cellularization during endosperm development. FH5 is expressed in the endosperm and the protein localizes to the cell plate.C.G.S.X.
0.002e-138At2g26890817230GRV2 (GRAVITROPISM DEFECTIVE 2)GRV2 has sequence similarity to the C. elegans protein RME-8 which is involved in endocytosis. grv2 mutants result in a reduction in gravitropic response in hypocotyls and shoots but do not affect root gravitropism. The mutants are defective in amyloplast sedimentation.C.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.183e-1067Glycine maxGmaAffx.78462.1.S1_atBI971954--8e-11At2g29990NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2)C.G.S.X.
0.197e-1581Hordeum vulgareContig10646_atContig10646--1e-14At2g29990NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2)C.G.S.X.
0.133e-861Oryza sativaOs01g0830100AK069755.1-FAD-dependent pyridine nucleotide-disulphideoxidoreductase domain containing protein1e-14At2g29990NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2)C.G.S.X.
0.051e+036Populus trichocarpaPtp.6164.1.S1_atDN490754hypothetical protein-2e-5At1g07180NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1)C.G.S.X.
0.082e-448Triticum aestivumTa.9105.1.S1_atCA633983--1e-4At1g07180NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1)C.G.S.X.
0.022e-136Vitis vinifera1621085_atCB982603hypothetical protein LOC100259425-4e-1At1g48440unknown proteinC.G.S.X.
0.051e-344Zea maysZm.1870.1.A1_atAW498006--1e-3At1g07180NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1)C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

00190Link to KEGG PATHWAYOxidative phosphorylation
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