Gene omics information

Query gene ID At2g29920
Gene name unknown protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5570.6At2g29920817542unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOS.X.H.G.
0.7687.4At2g07240815294cysteine-type peptidaseF:cysteine-type peptidase activity;P:proteolysis;C:cellular_component unknown;POFMBVS.X.H.G.
0.6781.6At2g052003768310transposable element geneF:unknown;P:unknown;C:unknownS.X.H.G.
0.6781.6At2g31460817704unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.6781.6At4g037303770544transposable element geneF:unknown;P:unknown;C:unknownS.X.H.G.
0.6478.9At3g42070823176transposable element geneF:unknown;P:unknown;C:unknownS.X.H.G.
0.6176.7At2g139403768461transposable element geneF:unknown;P:unknown;C:unknownS.X.H.G.
0.5974.7At3g266143768945transposable element geneF:unknown;P:unknown;C:unknownS.X.H.G.
0.5873.8At2g204603767852transposable element geneF:unknown;P:unknown;C:unknownS.X.H.G.
0.5673.0At1g246403766791transposable element geneF:unknown;P:unknown;C:unknownS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
373.3100.0GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
368.9100.0GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
349.4100.0GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
237.0100.0GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
119.699.9GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
117.999.9GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
108.299.9GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
97.499.9GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
91.899.9GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
89.099.9GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.023e-136At4g17470827458palmitoyl protein thioesterase family proteinF:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:endomembrane system;MPFOC.G.S.X.
0.033e-136At3g44300823555NIT2 (nitrilase 2)Encodes an enzyme that catalyzes the hydrolysis of indole-3-acetonitrile (IAN) to indole-3-acetic acid (IAA) (nitrile aminohydrolase, EC 3.5.5.1) and IAN to indole-3-acetamide (IAM) at lower levels. Mutants have reduced sensitivity to IAN and are sensitive to IAA. This enzyme likely participates in other non-auxin-related metabolic pathways.C.G.S.X.
0.043e-136At3g46100823753ATHRS1 (HISTIDYL-TRNA SYNTHETASE 1)histidyl-tRNA synthetaseC.G.S.X.
0.011e+034At5g61560836277protein kinase family proteinF:in 6 functions;P:protein amino acid phosphorylation, protein ubiquitination;C:chloroplast, plasma membrane;MPOBFVAC.G.S.X.
0.021e+034At5g48830834941unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPOC.G.S.X.
0.031e+034At3g13540820556ATMYB5 (MYB DOMAIN PROTEIN 5)Encodes a member of the MYB family of transcriptional regulators. MYB5 act as a negative regulator of trichome branching and play a role in the correct formation of the seed coat and possibly the formation the underlying endosperm layers. Loss of function mutations have defects in seed coat mucilage and columella cells as well as trichome defects (smaller and reduced number of branches).C.G.S.X.
0.021e+034At3g18180821345transferase, transferring glycosyl groupsF:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:cellular_component unknown;PMOBFC.G.S.X.
0.021e+034At3g18170821344transferase, transferring glycosyl groupsF:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:cellular_component unknown;PMBOFC.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.032e+034Glycine maxHgAffx.4352.1.S1_atCD749072--9e-1At2g29920unknown proteinC.G.S.X.
0.059e-340Hordeum vulgarerbags21i05_s_atrbags21i05--1e-11At3g4737040S ribosomal protein S20 (RPS20B)C.G.S.X.
Os02g04478000Os04g0107800Oryza sativaOs01g0320600---0C.G.S.X.
0.042e+034Populus trichocarpaPtpAffx.222860.1.S1_s_atpmrna40550cytochrome P450 /// cytochrome P450 /// cytochrome P450 /// cytochrome P450 /// cytochrome P450 /// cytochrome P450 /// hypothetical protein-8e-4At3g15460brix domain-containing proteinC.G.S.X.
0.045e+032Triticum aestivumTaAffx.31606.1.S1_atCA612026--4e+0At2g29920unknown proteinC.G.S.X.
0.045e+030Vitis vinifera1621546_atCF204967.1hypothetical protein LOC100263158-6e-6At4g10710SPT16 (global transcription factor C)C.G.S.X.
0.035e-134Zea maysZm.3258.1.A1_atAY111069.1--1e+0At2g4051040S ribosomal protein S26 (RPS26A)C.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage