Gene omics information

Query gene ID At2g29720
Gene name CTF2B
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.092.8At2g29720817522CTF2BEncodes CTF2B.S.X.H.G.
0.2522.6At5g01550831700LECRKA4.2 (LECTIN RECEPTOR KINASE A4.1)Encodes LecRKA4.2, a member of the lectin receptor kinase subfamily A4 (LecRKA4.1 At5g01540; LecRKA4.2 At5g01550; LecRKA4.3 At5g01560). Together with other members of the subfamily, functions redundantly in the negative regulation of ABA response in seed germination.S.X.H.G.
0.146.8At3g16530820901legume lectin family proteinLectin like protein whose expression is induced upon treatment with chitin oligomers.S.X.H.G.
0.092.8At4g11370826739RHA1AEncodes a putative RING-H2 finger protein RHA1a.S.X.H.G.
0.051.1At1g74360843777leucine-rich repeat transmembrane protein kinase, putativeF:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:mitochondrion;MPOBFVAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
116.799.9GSM13783Dexamethasone plus cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transition
106.499.9GSM13784Cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transition
97.399.9GSM13779Dexamethasone plus cycloheximideGSE911Identification of LEAFY targets during reproductive transition
91.899.9GSM13780CycloheximideGSE911Identification of LEAFY targets during reproductive transition
80.599.9E-NASC-76-raw-cel-1359879132
65.999.8E-NASC-76-raw-cel-1359879106
56.499.8GSM134387St.Clair_1-48_397_Est_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1GSE5754Expression Level Polymorphism Project (ELP) - Est
53.099.8GSM134386St.Clair_1-47_334_Est_0.30mM-SA-in-0.02%-silwet_Rep2_ATH1GSE5754Expression Level Polymorphism Project (ELP) - Est
50.999.8E-NASC-76-raw-cel-1359878951
47.799.8GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.8501485At2g35660818135CTF2AEncodes a member of a novel gene family with homology to known proteins involved in hydroxylation and oxidation of an aromatic ring.C.G.S.X.
0.031e-242At5g05320830414monooxygenase, putative (MO3)F:monooxygenase activity;P:metabolic process;C:cellular_component unknown;BFOPAMC.G.S.X.
0.016e-136At5g61000836221replication protein, putativeF:DNA binding, nucleic acid binding;P:DNA replication;C:nucleus;PMOFAC.G.S.X.
0.026e-136At1g244056240799unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.013e+034At5g64390836560HEN4 (HUA ENHANCER 4)encodes a K homology (KH) domain-containing, putative RNA binding protein that interacts with HUA1, a CCCH zinc finger RNA binding protein in the nucleus. HEN4 acts redundantly with HUA1 and HUA2 in the specification of floral organ identity in the third whorl.C.G.S.X.
0.013e+034At4g32890829425zinc finger (GATA type) family proteinF:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PFOMC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.106e-550Glycine maxGma.14572.1.A1_atCD394968--7e-9At2g35660CTF2AC.G.S.X.
0.023e-136Hordeum vulgareContig4540_atContig4540--3e-2At5g17460unknown proteinC.G.S.X.
0.032e-242Oryza sativaOs07g04919009635.m03031-Flavoprotein monooxygenase domain containingprotein5e-5At2g35660CTF2AC.G.S.X.
0.147e-1789Populus trichocarpaPtpAffx.62427.1.A1_atCV281429hypothetical protein-1e-26At2g35660CTF2AC.G.S.X.
0.023e+034Triticum aestivumTaAffx.78928.1.S1_atCA724119--3e+0At3g22660rRNA processing protein-relatedC.G.S.X.
0.021e-240Vitis vinifera1618395_atBQ793026hypothetical protein LOC100246244-4e-17At4g10840kinesin light chain-relatedC.G.S.X.
0.021e+034Zea maysZm.10223.1.S1_atBM078528elongin C-7e+0At4g19870kelch repeat-containing F-box family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0008152The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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