CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g29720

Gene name CTF2B

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.09 2.8 At2g29720 817522 CTF2B Encodes CTF2B. S.X. H.G.
0.25 22.6 At5g01550 831700 LECRKA4.2 (LECTIN RECEPTOR KINASE A4.1) Encodes LecRKA4.2, a member of the lectin receptor kinase subfamily A4 (LecRKA4.1 At5g01540; LecRKA4.2 At5g01550; LecRKA4.3 At5g01560). Together with other members of the subfamily, functions redundantly in the negative regulation of ABA response in seed germination. S.X. H.G.
0.14 6.8 At3g16530 820901 legume lectin family protein Lectin like protein whose expression is induced upon treatment with chitin oligomers. S.X. H.G.
0.09 2.8 At4g11370 826739 RHA1A Encodes a putative RING-H2 finger protein RHA1a. S.X. H.G.
0.05 1.1 At1g74360 843777 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:mitochondrion;MPOBFVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
116.7 99.9 GSM13783 Dexamethasone plus cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
106.4 99.9 GSM13784 Cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
97.3 99.9 GSM13779 Dexamethasone plus cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
91.8 99.9 GSM13780 Cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
80.5 99.9 E-NASC-76-raw-cel-1359879132
65.9 99.8 E-NASC-76-raw-cel-1359879106
56.4 99.8 GSM134387 St.Clair_1-48_397_Est_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1 GSE5754 Expression Level Polymorphism Project (ELP) - Est
53.0 99.8 GSM134386 St.Clair_1-47_334_Est_0.30mM-SA-in-0.02%-silwet_Rep2_ATH1 GSE5754 Expression Level Polymorphism Project (ELP) - Est
50.9 99.8 E-NASC-76-raw-cel-1359878951
47.7 99.8 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.85 0 1485 At2g35660 818135 CTF2A Encodes a member of a novel gene family with homology to known proteins involved in hydroxylation and oxidation of an aromatic ring. C.G. S.X.
0.03 1e-2 42 At5g05320 830414 monooxygenase, putative (MO3) F:monooxygenase activity;P:metabolic process;C:cellular_component unknown;BFOPAM C.G. S.X.
0.01 6e-1 36 At5g61000 836221 replication protein, putative F:DNA binding, nucleic acid binding;P:DNA replication;C:nucleus;PMOFA C.G. S.X.
0.02 6e-1 36 At1g24405 6240799 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 3e+0 34 At5g64390 836560 HEN4 (HUA ENHANCER 4) encodes a K homology (KH) domain-containing, putative RNA binding protein that interacts with HUA1, a CCCH zinc finger RNA binding protein in the nucleus. HEN4 acts redundantly with HUA1 and HUA2 in the specification of floral organ identity in the third whorl. C.G. S.X.
0.01 3e+0 34 At4g32890 829425 zinc finger (GATA type) family protein F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PFOM C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 6e-5 50 Glycine max Gma.14572.1.A1_at CD394968 - - 7e-9 At2g35660 CTF2A C.G. S.X.
0.02 3e-1 36 Hordeum vulgare Contig4540_at Contig4540 - - 3e-2 At5g17460 unknown protein C.G. S.X.
0.03 2e-2 42 Oryza sativa Os07g0491900 9635.m03031 - Flavoprotein monooxygenase domain containingprotein 5e-5 At2g35660 CTF2A C.G. S.X.
0.14 7e-17 89 Populus trichocarpa PtpAffx.62427.1.A1_at CV281429 hypothetical protein - 1e-26 At2g35660 CTF2A C.G. S.X.
0.02 3e+0 34 Triticum aestivum TaAffx.78928.1.S1_at CA724119 - - 3e+0 At3g22660 rRNA processing protein-related C.G. S.X.
0.02 1e-2 40 Vitis vinifera 1618395_at BQ793026 hypothetical protein LOC100246244 - 4e-17 At4g10840 kinesin light chain-related C.G. S.X.
0.02 1e+0 34 Zea mays Zm.10223.1.S1_at BM078528 elongin C - 7e+0 At4g19870 kelch repeat-containing F-box family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0008152 The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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