CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g29570

Gene name PCNA2 (PROLIFERATING CELL NUCLEAR ANTIGEN 2)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.73 85.5 At2g29570 817506 PCNA2 (PROLIFERATING CELL NUCLEAR ANTIGEN 2) Functionally interacts with POLH to repair DNA damaged by UVB damage. S.X. H.G.
0.89 94.6 At5g10390 830903 histone H3 F:DNA binding;P:nucleosome assembly;C:nucleus, chloroplast, nucleosome;MFPO S.X. H.G.
0.73 85.5 At1g07370 837249 PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) Encodes putative proliferating cell nuclear antigen involved in cell cycle regulation. S.X. H.G.
0.56 73.0 At2g24490 816985 RPA2 (REPLICON PROTEIN A2) Encodes a component of Replication Protein A. Component of transcriptional gene silencing which does not affect endogenous small RNA accumulation nor DNA methylation. Localized in the nucleus. Involved in DNA repair. Interacts physically with ROS1. S.X. H.G.
0.44 57.2 At5g65360 836661 histone H3 F:DNA binding;P:nucleosome assembly;C:nucleus, chloroplast, nucleosome;MFPO S.X. H.G.
0.40 50.8 At5g61000 836221 replication protein, putative F:DNA binding, nucleic acid binding;P:DNA replication;C:nucleus;PMOFA S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
44.9 99.8 GSM284385 Arabidopsis GEP6 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
26.3 99.7 GSM311287 Laser capture microdissected (LCM) embryo proper at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
25.3 99.6 GSM133945 Murray_2-1_T0-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
24.1 99.6 GSM311288 Laser capture microdissected (LCM) embryo proper at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
23.8 99.6 E-MEXP-728-raw-cel-1062074653
23.8 99.6 E-MEXP-728-raw-cel-1062074758
20.5 99.6 GSM133947 Murray_2-3_T4-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
19.8 99.6 GSM284384 Arabidopsis GEP5 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
19.3 99.6 E-MEXP-728-raw-cel-1062074684
19.2 99.6 GSM133776 Lindsey_1-1_globular-apical_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.81 0 674 At1g07370 837249 PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) Encodes putative proliferating cell nuclear antigen involved in cell cycle regulation. C.G. S.X.
0.02 3e-2 40 At3g49610 824123 DNA binding F:DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;PB C.G. S.X.
0.01 1e-1 38 At5g45200 834556 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFA C.G. S.X.
0.02 1e-1 38 At5g62020 836322 AT-HSFB2A member of Heat Stress Transcription Factor (Hsf) family C.G. S.X.
0.02 1e-1 38 At3g20015 821540 aspartic-type endopeptidase F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PMFO C.G. S.X.
0.02 1e-1 38 At2g26600 817201 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to membrane;POF C.G. S.X.
0.02 1e-1 38 At1g71120 843452 GLIP6 Contains lipase signature motif and GDSL domain. C.G. S.X.
0.01 4e-1 36 At5g06110 830498 DNAJ heat shock N-terminal domain-containing protein / cell division protein-related F:heat shock protein binding, DNA binding;P:protein folding;C:unknown;MOBFPVA C.G. S.X.
0.01 4e-1 36 At3g24240 822011 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.45 2e-31 137 Glycine max Gma.431.1.S1_at CD390728 proliferating cell nuclear antigen - 2e-56 At1g07370 PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) C.G. S.X.
0.12 5e-5 48 Hordeum vulgare Contig6099_at Contig6099 - - 6e-35 At1g07370 PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) C.G. S.X.
0.23 5e-8 59 Oryza sativa Os.3376.1.S1_at - - - 0 C.G. S.X.
0.51 5e-75 282 Populus trichocarpa Ptp.6624.1.S1_at CV253392 hypothetical protein - 5e-60 At1g07370 PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) C.G. S.X.
0.11 4e-4 46 Triticum aestivum Ta.2876.1.S1_x_at BE417035 - - 2e-22 At1g07370 PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) C.G. S.X.
0.16 1e-10 65 Vitis vinifera 1610854_at BQ797704 hypothetical protein LOC100248466 - 4e-18 At1g07370 PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) C.G. S.X.
0.27 2e-7 56 Zea mays Zm.531.1.S1_at U87949.1 proliferating cell nuclear antigen2 - 9e-37 At1g07370 PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0042276 The conversion of DNA-damage induced single-stranded gaps into large molecular weight DNA after replication by using a specialized DNA polymerase or replication complex to insert a defined nucleotide across the lesion. This process does not remove the replication-blocking lesions and causes an increase in the endogenous mutation level. For example, in E. coli, a low fidelity DNA polymerase, pol V, copies lesions that block replication fork progress. This produces mutations specifically targeted to DNA template damage sites, but it can also produce mutations at undamaged sites.
C GO:0006275 Any process that modulates the frequency, rate or extent of DNA replication.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
03030 DNA replication
03410 Base excision repair
03420 Nucleotide excision repair
03430 Mismatch repair
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage