CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g29330

Gene name TRI (tropinone reductase)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.79 89.1 At2g29330 817482 TRI (tropinone reductase) F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAV S.X. H.G.
0.71 84.2 At2g28780 817427 unknown protein F:unknown;P:biological_process unknown;C:mitochondrion;BPO S.X. H.G.
0.69 82.9 At1g32450 840139 NRT1.5 (NITRATE TRANSPORTER 1.5) Transmembrane nitrate transporter. Involved in xylem transport of nitrate from root to shoot. Induced in response to nitrate. Not involved in nitrate uptake. expressed in root pericycle cells. S.X. H.G.
0.66 80.1 At5g65210 836646 TGA1 F:transcription factor activity, calmodulin binding, DNA binding;P:defense response to bacterium;C:nucleus;POM S.X. H.G.
0.62 77.3 At5g63600 836480 FLS5 (FLAVONOL SYNTHASE 5) encodes a protein whose sequence is similar to flavonol synthase S.X. H.G.
0.60 75.7 At1g13300 837890 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POVBMF S.X. H.G.
0.59 74.7 At1g31060 839992 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM S.X. H.G.
0.59 74.7 At3g62040 825377 catalytic/ hydrolase F:hydrolase activity, catalytic activity;P:metabolic process;C:unknown;OBPFA S.X. H.G.
0.59 74.7 At5g59520 836071 ZIP2 encodes a metal ion transporter whose expression is regulated by copper. S.X. H.G.
0.54 69.5 At5g50760 835148 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
105.5 99.9 GSM311275 Laser capture microdissected (LCM) micropylar endosperm at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
94.9 99.9 GSM157327 Hammond_3-11_Potassium-starved-root_Rep2_ATH1 GSE6825 Differential gene expression patterns in potassium-starved and Caesium-treated plants
81.4 99.9 GSM157324 Hammond_3-17_Potassium-starved-root_Rep3_ATH1 GSE6825 Differential gene expression patterns in potassium-starved and Caesium-treated plants
69.1 99.9 GSM284389 Arabidopsis GMPE2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
60.4 99.8 GSM311276 Laser capture microdissected (LCM) micropylar endospermr at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
56.8 99.8 GSM179973 Arabidopsis roots, IAA treatment, replica 1 GSE7432 Ethylene and auxin interactions in the roots of Arabidopsis seedlings
53.0 99.8 GSM179974 Arabidopsis roots, IAA treatment, replica 2 GSE7432 Ethylene and auxin interactions in the roots of Arabidopsis seedlings
50.1 99.8 GSM157315 Hammond_3-5_Potassium-starved-root_Rep1_ATH1 GSE6825 Differential gene expression patterns in potassium-starved and Caesium-treated plants
47.3 99.8 GSM131370 AtGen_6-5322_Genotoxicstress-Roots-3.0h_Rep2 GSE5625 AtGenExpress: Stress Treatments (Genotoxic stress)
46.4 99.8 GSM179963 Arabidopsis aux1 mutant roots, air treatment, replica 1 GSE7432 Ethylene and auxin interactions in the roots of Arabidopsis seedlings
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.75 2e-126 452 At2g29340 817483 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAV C.G. S.X.
0.80 3e-88 325 At2g29310 817480 tropinone reductase, putative / tropine dehydrogenase, putative F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:endomembrane system;BOMFPAV C.G. S.X.
0.77 4e-84 311 At2g30670 817617 tropinone reductase, putative / tropine dehydrogenase, putative F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAV C.G. S.X.
0.67 6e-71 268 At2g29300 817479 tropinone reductase, putative / tropine dehydrogenase, putative F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:endomembrane system;BOMFPAV C.G. S.X.
0.73 3e-66 252 At2g29320 817481 tropinone reductase, putative / tropine dehydrogenase, putative F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAV C.G. S.X.
0.17 5e-28 125 At2g29290 817478 tropinone reductase, putative / tropine dehydrogenase, putative F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 6e-4 46 Glycine max Gma.5113.1.S1_s_at BI971033 - - 5e-1 At5g06060 tropinone reductase, putative / tropine dehydrogenase, putative C.G. S.X.
0.03 3e+0 32 Hordeum vulgare Contig14969_at Contig14969 - - 9e-2 At3g48860 unknown protein C.G. S.X.
0.04 1e-2 42 Oryza sativa OsAffx.26103.1.S1_at - - - 0 C.G. S.X.
0.07 3e-2 40 Populus trichocarpa PtpAffx.200766.1.S1_at pmrna1486 hypothetical protein - 7e-18 At2g29260 tropinone reductase, putative / tropine dehydrogenase, putative C.G. S.X.
0.03 1e-1 38 Triticum aestivum TaAffx.49997.3.S1_s_at CA744881 Cryptochrome 2 - 1e+0 At4g09030 AGP10 (ARABINOGALACTAN PROTEIN 10) C.G. S.X.
0.06 5e-4 44 Vitis vinifera 1608541_s_at CF201527.1 hypothetical protein LOC100244953 /// hypothetical protein LOC100267258 /// hypothetical protein LOC100256993 - 2e-2 At1g07450 tropinone reductase, putative / tropine dehydrogenase, putative C.G. S.X.
0.02 1e+1 30 Zea mays Zm.9976.1.A1_at CA399976 - - 2e+0 At4g02170 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0008152 The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00960 Tropane, piperidine and pyridine alkaloid biosynthesis
01064 Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid
01100 Metabolic pathways
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