CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g29310

Gene name tropinone reductase, putative / tropine dehydrogenase, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At2g29310 817480 tropinone reductase, putative / tropine dehydrogenase, putative F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:endomembrane system;BOMFPAV S.X. H.G.
0.65 79.6 At2g05310 815079 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P S.X. H.G.
0.64 78.9 At3g02730 821260 TRXF1 (THIOREDOXIN F-TYPE 1) F:enzyme activator activity;P:positive regulation of catalytic activity;C:chloroplast, chloroplast stroma;BOMPFAV S.X. H.G.
0.63 78.1 At1g75460 843882 ATP-dependent protease La (LON) domain-containing protein F:ATP-dependent peptidase activity;P:ATP-dependent proteolysis;C:chloroplast;OBMPF S.X. H.G.
0.61 76.7 At2g27290 817272 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;MPO S.X. H.G.
0.61 76.7 At3g50685 824232 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PO S.X. H.G.
0.60 75.7 At1g52220 841652 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;PBO S.X. H.G.
0.57 73.8 At3g54900 824655 CXIP1 (CAX INTERACTING PROTEIN 1) A.thaliana PICOT protein.It activates CAX1 gene Calcium transport activity.In other organisms, PICOT proteins appear to play a negative regulatory role in cellular stress responses. S.X. H.G.
0.56 73.0 At5g08410 830739 FTRA2 (ferredoxin/thioredoxin reductase subunit A (variable subunit) 2) F:ferredoxin:thioredoxin reductase activity, lipoate synthase activity, catalytic activity, ferredoxin reductase activity;P:photosynthesis, light reaction, lipoate biosynthetic process, photosynthesis;C:chloroplast;BPO S.X. H.G.
0.55 70.6 At3g50270 824189 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:unknown;PF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
18.7 99.5 GSM173445 oxt6 mutant, biological rep1 GSE7211 A polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thaliana
13.4 99.4 GSM151701 Col-0 48 hpi, biological replicate 2 GSE6556 Expression profiling of A. thaliana wild type Columbia-0 and mutant gh3.5-1D in response to pathogen Pst DC3000(avrRpt2)
13.3 99.4 Millenaar_A2_ETH_Rep1_ATH1
12.4 99.3 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
12.1 99.3 GSM134375 St.Clair_1-36_454b_Cvi-1_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1 GSE5753 Expression Level Polymorphism Project (ELP) - Cvi-1
11.6 99.3 GSM260958 A6-LLOYD-CON_REP3 GSE10326 Transcriptome analysis of pho3
11.2 99.2 Millenaar_A2_ETH_Rep2_ATH1
10.9 99.2 GSM74895 Wildtype_no treatment_Rep2 GSE3326 ICE1 regulation of the Arabidopsis Cold-Responsive Transcriptome
10.1 99.2 GSM173447 oxt6 mutant, biological rep3 GSE7211 A polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thaliana
9.9 99.1 Millenaar_A1_AIR_Rep1_ATH1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.83 0 728 At2g29300 817479 tropinone reductase, putative / tropine dehydrogenase, putative F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:endomembrane system;BOMFPAV C.G. S.X.
0.79 0 722 At2g29340 817483 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAV C.G. S.X.
0.82 0 696 At2g29320 817481 tropinone reductase, putative / tropine dehydrogenase, putative F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAV C.G. S.X.
0.82 5e-127 454 At2g30670 817617 tropinone reductase, putative / tropine dehydrogenase, putative F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAV C.G. S.X.
0.80 3e-88 325 At2g29330 817482 TRI (tropinone reductase) F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAV C.G. S.X.
0.30 2e-21 103 At1g07450 837257 tropinone reductase, putative / tropine dehydrogenase, putative F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 9e-3 42 Glycine max GmaAffx.36123.1.S1_at BU082571 - - 9e-10 At2g29260 tropinone reductase, putative / tropine dehydrogenase, putative C.G. S.X.
0.03 7e-1 34 Hordeum vulgare HVSMEl0002I24r2_at HVSMEl0002I24r2 - - 1e+0 At2g29310 tropinone reductase, putative / tropine dehydrogenase, putative C.G. S.X.
0.04 1e-5 52 Oryza sativa Os.30077.3.S1_at - - - 0 C.G. S.X.
0.10 1e-1 38 Populus trichocarpa PtpAffx.200766.1.S1_at pmrna1486 hypothetical protein - 7e-18 At2g29260 tropinone reductase, putative / tropine dehydrogenase, putative C.G. S.X.
0.06 4e-7 56 Triticum aestivum Ta.9121.1.S1_at BE493270 - - 1e-5 At2g29300 tropinone reductase, putative / tropine dehydrogenase, putative C.G. S.X.
0.09 5e-7 54 Vitis vinifera 1617214_s_at BQ799716 hypothetical protein LOC100250092 - 4e-3 At2g29320 tropinone reductase, putative / tropine dehydrogenase, putative C.G. S.X.
0.07 3e-3 42 Zea mays Zm.11878.1.A1_at AY110052.1 tropinone reductase - 4e-2 At2g29260 tropinone reductase, putative / tropine dehydrogenase, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0008152 The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00960 Tropane, piperidine and pyridine alkaloid biosynthesis
01064 Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid
01100 Metabolic pathways
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