Gene omics information

Query gene ID At2g29210
Gene name splicing factor PWI domain-containing protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5974.7At2g29210817470splicing factor PWI domain-containing proteinF:unknown;P:RNA splicing;C:unknown;MOFBPVAS.X.H.G.
0.8592.4At3g02760820930ATP binding / aminoacyl-tRNA ligase/ histidine-tRNA ligase/ nucleotide bindingF:histidine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:histidyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:chloroplast, cytoplasm;OBMFAPS.X.H.G.
0.8089.8At1g74250843765DNAJ heat shock N-terminal domain-containing proteinF:heat shock protein binding, zinc ion binding, nucleic acid binding;P:protein folding;C:intracellular;MOBFPVAS.X.H.G.
0.7788.0At3g06010819772ATCHR12Encodes AtCHR12, a SNF2/Brahma-type chromatin-remodeling protein. AtCHR12 mediates temporary growth arrest in Arabidopsis upon perceiving environmental stress.S.X.H.G.
0.7788.0At3g24490822039transcription factorF:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;MOPFBVS.X.H.G.
0.7486.1At2g06210815177ELF8 (EARLY FLOWERING 8)Encodes a yeast CTR9 homolog that is involved in the control of flowering time by elevating FLC expression to a level that creates the vernalization-responsive, winter-annual habit. Yeast CTR9 is a component of a five-member PAF1 complex that associates with RNA pol II and is thought to regulate gene expression by recruiting SET1 (a histone 3 Lys 4 [H3-K4] methyl transferase) to the initially transcribed [5'] regions of target chromatin. Mutants display reduced H3-K4 methylation in both FLC and FLM chromatin.S.X.H.G.
0.7184.2At3g50690824233leucine-rich repeat family proteinF:protein binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVAS.X.H.G.
0.7083.5At1g18950838476aminoacyl-tRNA synthetase familyF:aminoacyl-tRNA ligase activity;P:biological_process unknown;C:unknown;MOFBPVAS.X.H.G.
0.7083.5At3g19650821502cyclin-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVS.X.H.G.
0.6982.9At1g47970841215unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cytosol;MOFBPVAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
177.8100.0GSM284396Arabidopsis GPSc2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
112.699.9GSM284390Arabidopsis GPE2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
111.299.9GSM284384Arabidopsis GEP5GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
109.699.9GSM284395Arabidopsis GPSc1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
106.399.9GSM284385Arabidopsis GEP6GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
99.799.9GSM284391Arabidopsis GPE3GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
75.599.9GSM311281Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
74.399.9GSM284394Arabidopsis GCE3GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
59.899.8GSM284398Arabidopsis GGSc2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
55.699.8GSM311292Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 2GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.012e-242At5g10690830933pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing proteinF:unknown;P:biological_process unknown;C:chloroplast;POMFBAC.G.S.X.
0.018e-240At5g20480832170EFR (EF-TU RECEPTOR)Encodes a predicted leucine-rich repeat receptor kinase (LRR-RLK). Functions as the receptor for bacterial PAMP (pathogen associated molecular patterns) EF-Tu.C.G.S.X.
0.013e-138At2g21680816706-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBOC.G.S.X.
0.013e-138At1g11160837657nucleotide bindingF:nucleotide binding;P:unknown;C:CUL4 RING ubiquitin ligase complex;MFOPBAVC.G.S.X.
0.011e+036At5g66670836799unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;POBC.G.S.X.
0.011e+036At5g66675836800unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOC.G.S.X.
0.011e+036At4g17570827474zinc finger (GATA type) family proteinF:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PFOMBC.G.S.X.
0.011e+036At2g35800818153mitochondrial substrate carrier family proteinF:binding, calcium ion binding;P:transport;C:mitochondrial inner membrane, chloroplast envelope;MFPOC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.031e-140Glycine maxGma.3530.2.S1_atAI965473--4e-2At2g29210splicing factor PWI domain-containing proteinC.G.S.X.
0.013e+034Hordeum vulgareHVSMEn0022N15r2_atHVSMEn0022N15r2--3e-1At1g69500electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen bindingC.G.S.X.
0.047e-757Oryza sativaOs03g0270200AK102826.1-SRm160/300 splicing coactivator (Fragment)4e-7At2g29210splicing factor PWI domain-containing proteinC.G.S.X.
0.153e-39165Populus trichocarpaPtpAffx.200767.1.S1_atpmrna1490hypothetical protein-4e-40At2g29210splicing factor PWI domain-containing proteinC.G.S.X.
0.042e-552Triticum aestivumTaAffx.15370.1.S1_atBJ245483--8e-6At2g29210splicing factor PWI domain-containing proteinC.G.S.X.
0.065e-1375Vitis vinifera1620479_atCD716240--2e-13At2g29210splicing factor PWI domain-containing proteinC.G.S.X.
0.011e-138Zea maysZm.9000.1.A1_atBM378319alpha-glucan phosphorylase, H isozyme-2e-22At3g46970PHS2 (ALPHA-GLUCAN PHOSPHORYLASE 2)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008380The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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