CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g29120

Gene name ATGLR2.7

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.13 5.8 At2g29120 817460 ATGLR2.7 member of Putative ligand-gated ion channel subunit family S.X. H.G.
0.75 86.9 At1g35710 840475 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.67 81.6 At3g11010 820272 AtRLP34 (Receptor Like Protein 34) F:protein binding, kinase activity;P:signal transduction, defense response;C:cellular_component unknown;PMOBFAV S.X. H.G.
0.57 73.8 At4g23140 828413 CRK6 (CYSTEINE-RICH RLK 6) Arabidopsis thaliana receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307) S.X. H.G.
0.50 65.3 At3g23110 821886 AtRLP37 (Receptor Like Protein 37) F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
50.8 99.8 E-MEXP-98-raw-cel-320189079
49.8 99.8 E-MEXP-98-raw-cel-320188859
44.4 99.8 GSM131537 ATGE_25_A GSE5630 AtGenExpress: Developmental series (leaves)
39.8 99.8 GSM128671 Underwood_1-24_hrpAfliC-10e8-7h_Rep3_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
39.4 99.8 E-MEXP-173-raw-cel-357965452
37.2 99.7 GSM131539 ATGE_25_C GSE5630 AtGenExpress: Developmental series (leaves)
34.9 99.7 GSM131538 ATGE_25_B GSE5630 AtGenExpress: Developmental series (leaves)
34.6 99.7 GSM142854 MG001_ATH1_A7-Torres-3N1 GSE6176 Impact of Type III effectors on plant defense responses
33.8 99.7 GSM128672 Underwood_1-27_hrpA-10e8-7h_Rep3_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
33.6 99.7 GSM142849 MG001_ATH1_A2-Torres-1N3 GSE6176 Impact of Type III effectors on plant defense responses
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.55 2e-117 424 At2g29100 817458 ATGLR2.9 member of Putative ligand-gated ion channel subunit family C.G. S.X.
0.60 3e-103 377 At2g29110 817459 ATGLR2.8 member of Putative ligand-gated ion channel subunit family C.G. S.X.
0.01 2e-2 42 At5g11210 830991 ATGLR2.5 member of Putative ligand-gated ion channel subunit family C.G. S.X.
0.01 4e-1 38 At3g29010 822541 catalytic F:catalytic activity;P:protein modification process;C:cellular_component unknown;BOFPAM C.G. S.X.
0.01 4e-1 38 At3g07520 819940 GLR1.4 (GLUTAMATE RECEPTOR 1.4) member of Putative ligand-gated ion channel subunit family. Contains a functional cation - permeable pore domain. Involved in cellular cation homeostasis. C.G. S.X.
0.01 4e-1 38 At2g39300 818515 unknown protein F:unknown;P:biological_process unknown;C:vacuole;MOBFPAV C.G. S.X.
0.02 1e+0 36 At5g11180 830988 ATGLR2.6 member of Putative ligand-gated ion channel subunit family C.G. S.X.
0.01 1e+0 36 At5g27100 832768 ATGLR2.1 member of Putative ligand-gated ion channel subunit family C.G. S.X.
0.01 1e+0 36 At3g17550 821021 NLI interacting factor (NIF) family protein F:phosphoprotein phosphatase activity;P:unknown;C:nucleus, chloroplast;MOFP C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 8e-3 44 Glycine max Gma.6170.1.S1_at BQ611880 - - 1e+0 At5g35410 SOS2 (SALT OVERLY SENSITIVE 2) C.G. S.X.
0.01 3e+0 34 Hordeum vulgare Contig23293_at Contig23293 - - 6e-1 At5g59830 unknown protein C.G. S.X.
0.01 3e+0 36 Oryza sativa Os06g0190800 AK103393.1 - NMDA receptor family protein 2e-6 At5g11180 ATGLR2.6 C.G. S.X.
0.04 3e-5 52 Populus trichocarpa PtpAffx.214267.1.S1_at pmrna27767 glutamate-gated kainate-type ion channel receptor subunit GluR5 - 5e-3 At5g11180 ATGLR2.6 C.G. S.X.
0.01 4e-1 38 Triticum aestivum Ta.30777.1.S1_at CN009422 - - 6e-6 At1g49975 unknown protein C.G. S.X.
0.01 1e-1 38 Vitis vinifera 1619737_at BQ799058 hypothetical protein LOC100252379 - 4e+0 At5g05670 signal recognition particle binding C.G. S.X.
0.01 2e+0 34 Zea mays Zm.6016.1.A1_at CO534758 hypothetical protein LOC100272384 - 5e+0 Atcg01300 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0006874 Any process involved in the maintenance of an internal equilibrium of calcium ions at the level of a cell.
N GO:0009416 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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