CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g28990

Gene name leucine-rich repeat protein kinase, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.42 53.9 At2g28990 817448 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA S.X. H.G.
0.71 84.2 At1g11540 837697 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OBAP S.X. H.G.
0.70 83.5 At3g51350 824298 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:anchored to membrane;PMFOBAV S.X. H.G.
0.67 81.6 At5g59680 836089 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA S.X. H.G.
0.53 68.6 At4g10550 826647 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAM S.X. H.G.
0.53 68.6 At2g28270 817373 DC1 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO S.X. H.G.
0.50 65.3 At5g45080 834539 AtPP2-A6 (Phloem protein 2-A6) F:carbohydrate binding;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;P S.X. H.G.
0.46 59.8 At2g14440 815932 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA S.X. H.G.
0.43 55.3 At2g42060 818806 CHP-rich zinc finger protein, putative F:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PM S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
197.1 100.0 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
111.6 99.9 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
99.0 99.9 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
96.4 99.9 GSM133766 Lindsey_1-18_torpedo-root_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
89.5 99.9 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
83.8 99.9 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
77.5 99.9 GSM157329 Coates_1-1_Col-0_Rep1_ATH1 GSE6826 Identification of candidate Arabidillo target genes in Arabidopsis
72.7 99.9 E-MEXP-828-raw-cel-1156922368
70.6 99.9 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
69.2 99.9 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.60 0 694 At2g28970 817446 leucine-rich repeat protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA C.G. S.X.
0.25 2e-67 258 At3g21340 821688 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA C.G. S.X.
0.15 5e-37 157 At3g46370 823783 leucine-rich repeat protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:cellular_component unknown;PMOBFVA C.G. S.X.
0.15 2e-36 155 At3g46400 823790 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA C.G. S.X.
0.19 1e-34 149 At3g46420 823792 leucine-rich repeat family protein / protein kinase family protein F:protein binding, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA C.G. S.X.
0.20 2e-33 145 At1g51850 841612 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;PMOBFVA C.G. S.X.
0.16 1e-31 139 At1g51805 841607 leucine-rich repeat protein kinase, putative F:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA C.G. S.X.
0.19 3e-29 131 At2g29000 817449 leucine-rich repeat family protein / protein kinase family protein F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.16 7e-27 123 At5g59680 836089 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 5e-1 38 Glycine max GmaAffx.47016.1.S1_at AW310615 - - 3e-2 At3g46290 protein kinase, putative C.G. S.X.
0.02 3e-3 44 Hordeum vulgare Contig12884_at Contig12884 - - 9e-9 At1g06840 leucine-rich repeat transmembrane protein kinase, putative C.G. S.X.
0.02 2e-7 59 Oryza sativa Os.53728.1.S1_at - - - 0 C.G. S.X.
0.03 8e-3 44 Populus trichocarpa PtpAffx.31243.1.A1_at CV242354 - - 3e-8 At5g38210 serine/threonine protein kinase family protein C.G. S.X.
0.02 3e-1 38 Triticum aestivum Ta.27859.1.A1_at CD922428 wall-associated kinase 4 - 8e-5 At1g56720 protein kinase family protein C.G. S.X.
0.02 4e-1 36 Vitis vinifera 1615921_at CF513917 hypothetical protein LOC100262619 - 2e-13 At4g36180 leucine-rich repeat family protein C.G. S.X.
0.01 6e-1 36 Zea mays Zm.16290.1.S1_at AI677084 - - 2e-7 At1g74060 60S ribosomal protein L6 (RPL6B) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006468 The process of introducing a phosphate group on to a protein.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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