Gene omics information

Query gene ID At2g28780
Gene name unknown protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At2g28780817427unknown proteinF:unknown;P:biological_process unknown;C:mitochondrion;BPOS.X.H.G.
0.8994.6At1g32450840139NRT1.5 (NITRATE TRANSPORTER 1.5)Transmembrane nitrate transporter. Involved in xylem transport of nitrate from root to shoot. Induced in response to nitrate. Not involved in nitrate uptake. expressed in root pericycle cells.S.X.H.G.
0.6176.7At5g43180834336unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBOS.X.H.G.
0.6075.7At3g62040825377catalytic/ hydrolaseF:hydrolase activity, catalytic activity;P:metabolic process;C:unknown;OBPFAS.X.H.G.
0.5773.8At3g23430821924PHO1 (phosphate 1)mutant is deficient in the transfer of phosphate from root epidermal and cortical cells to the xylem. encodes protein with the mainly hydrophilic N-terminal and the C-terminal containing 6 potential membrane-spanning domains.S.X.H.G.
0.3846.7At5g65210836646TGA1F:transcription factor activity, calmodulin binding, DNA binding;P:defense response to bacterium;C:nucleus;POMS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
100.299.9GSM179958Arabidopsis roots, air treatment, replica 1GSE7432Ethylene and auxin interactions in the roots of Arabidopsis seedlings
89.899.9GSM179972Arabidopsis roots, mock treatment, replica 2GSE7432Ethylene and auxin interactions in the roots of Arabidopsis seedlings
75.399.9GSM128693Heinekamp_1-2_control-root_Rep1_ATH1GSE5522Low chronic exposure of Arabidopsis thaliana to Caesium-137
74.899.9GSM179973Arabidopsis roots, IAA treatment, replica 1GSE7432Ethylene and auxin interactions in the roots of Arabidopsis seedlings
74.899.9GSM179974Arabidopsis roots, IAA treatment, replica 2GSE7432Ethylene and auxin interactions in the roots of Arabidopsis seedlings
69.199.9GSM179971Arabidopsis roots, mock treatment, replica 1GSE7432Ethylene and auxin interactions in the roots of Arabidopsis seedlings
68.099.9GSM179963Arabidopsis aux1 mutant roots, air treatment, replica 1GSE7432Ethylene and auxin interactions in the roots of Arabidopsis seedlings
62.199.8GSM131265AtGen_6-1221_Cold(4°C)-Roots-1.0h_Rep1GSE5621AtGenExpress: Stress Treatments (Cold stress)
58.899.8GSM179960Arabidopsis roots, ethylene treatment, replica 1GSE7432Ethylene and auxin interactions in the roots of Arabidopsis seedlings
53.499.8GSM131413AtGen_6-8723_Woundingstress-Roots-0.25h_Rep1GSE5627AtGenExpress: Stress Treatments (Wounding stress)
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.015e-344At3g51420824305SSL4 (STRICTOSIDINE SYNTHASE-LIKE 4)F:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endomembrane system;BPMOFAC.G.S.X.
0.018e-240At5g66850836819MAPKKK5member of MEKK subfamilyC.G.S.X.
0.018e-240At1g62935842595unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OMPBC.G.S.X.
0.013e-138At5g57520835856ZFP2 (ZINC FINGER PROTEIN 2)Encodes a zinc finger protein containing only a single zinc finger.C.G.S.X.
0.013e-138At5g13980831246glycosyl hydrolase family 38 proteinF:in 6 functions;P:mannose metabolic process, carbohydrate metabolic process;C:apoplast, cell wall, plasma membrane, vacuole, plant-type cell wall;MOPBFAC.G.S.X.
0.013e-138At3g52480824413unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PC.G.S.X.
0.013e-138At3g11220820292Paxneb protein-relatedA subunit of Elongator, a histone acetyl transferase complex, consisting of six subunits (ELP1ELP6), that copurifies with the elongating RNAPII in yeast and humans. Three Arabidopsis thaliana genes, encoding homologs of the yeast Elongator subunits ELP1, ELP3 (histone acetyl transferase), and ELP4 are responsible for the narrow leaf phenotype in elongata mutants and for reduced root growth that results from a decreased cell division rate.C.G.S.X.
0.013e-138At2g23410816873ACPT (Arabidopsis cis-prenyltransferase)encodes cis-prenyltransferaseC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.024e-138Glycine maxGma.18.1.S1_atU21723.1Hsp22.3-6e+0At5g26330plastocyanin-like domain-containing protein / mavicyanin, putativeC.G.S.X.
0.012e+034Hordeum vulgareHVSMEg0006G02r2_s_atHVSMEg0006G02r2--1e+0At1g10800unknown proteinC.G.S.X.
0.022e-140Oryza sativaOs08g03514009636.m02585--3e-3At3g56810unknown proteinC.G.S.X.
0.044e-448Populus trichocarpaPtp.2888.1.S1_atDN502848hypothetical protein-1e+0At5g06190unknown proteinC.G.S.X.
0.021e+036Triticum aestivumTa.26703.1.A1_atCD491616--4e-1At2g28780unknown proteinC.G.S.X.
0.019e-238Vitis vinifera1612809_atCD005512--4e-3At1g75890family II extracellular lipase 2 (EXL2)C.G.S.X.
0.012e+034Zea maysZm.3979.1.S1_atAY106386.1hypothetical protein LOC100273391-7e-13At3g22845emp24/gp25L/p24 protein-relatedC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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