CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g28780

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At2g28780 817427 unknown protein F:unknown;P:biological_process unknown;C:mitochondrion;BPO S.X. H.G.
0.89 94.6 At1g32450 840139 NRT1.5 (NITRATE TRANSPORTER 1.5) Transmembrane nitrate transporter. Involved in xylem transport of nitrate from root to shoot. Induced in response to nitrate. Not involved in nitrate uptake. expressed in root pericycle cells. S.X. H.G.
0.61 76.7 At5g43180 834336 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBO S.X. H.G.
0.60 75.7 At3g62040 825377 catalytic/ hydrolase F:hydrolase activity, catalytic activity;P:metabolic process;C:unknown;OBPFA S.X. H.G.
0.57 73.8 At3g23430 821924 PHO1 (phosphate 1) mutant is deficient in the transfer of phosphate from root epidermal and cortical cells to the xylem. encodes protein with the mainly hydrophilic N-terminal and the C-terminal containing 6 potential membrane-spanning domains. S.X. H.G.
0.38 46.7 At5g65210 836646 TGA1 F:transcription factor activity, calmodulin binding, DNA binding;P:defense response to bacterium;C:nucleus;POM S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
100.2 99.9 GSM179958 Arabidopsis roots, air treatment, replica 1 GSE7432 Ethylene and auxin interactions in the roots of Arabidopsis seedlings
89.8 99.9 GSM179972 Arabidopsis roots, mock treatment, replica 2 GSE7432 Ethylene and auxin interactions in the roots of Arabidopsis seedlings
75.3 99.9 GSM128693 Heinekamp_1-2_control-root_Rep1_ATH1 GSE5522 Low chronic exposure of Arabidopsis thaliana to Caesium-137
74.8 99.9 GSM179973 Arabidopsis roots, IAA treatment, replica 1 GSE7432 Ethylene and auxin interactions in the roots of Arabidopsis seedlings
74.8 99.9 GSM179974 Arabidopsis roots, IAA treatment, replica 2 GSE7432 Ethylene and auxin interactions in the roots of Arabidopsis seedlings
69.1 99.9 GSM179971 Arabidopsis roots, mock treatment, replica 1 GSE7432 Ethylene and auxin interactions in the roots of Arabidopsis seedlings
68.0 99.9 GSM179963 Arabidopsis aux1 mutant roots, air treatment, replica 1 GSE7432 Ethylene and auxin interactions in the roots of Arabidopsis seedlings
62.1 99.8 GSM131265 AtGen_6-1221_Cold(4°C)-Roots-1.0h_Rep1 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
58.8 99.8 GSM179960 Arabidopsis roots, ethylene treatment, replica 1 GSE7432 Ethylene and auxin interactions in the roots of Arabidopsis seedlings
53.4 99.8 GSM131413 AtGen_6-8723_Woundingstress-Roots-0.25h_Rep1 GSE5627 AtGenExpress: Stress Treatments (Wounding stress)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 5e-3 44 At3g51420 824305 SSL4 (STRICTOSIDINE SYNTHASE-LIKE 4) F:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endomembrane system;BPMOFA C.G. S.X.
0.01 8e-2 40 At5g66850 836819 MAPKKK5 member of MEKK subfamily C.G. S.X.
0.01 8e-2 40 At1g62935 842595 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OMPB C.G. S.X.
0.01 3e-1 38 At5g57520 835856 ZFP2 (ZINC FINGER PROTEIN 2) Encodes a zinc finger protein containing only a single zinc finger. C.G. S.X.
0.01 3e-1 38 At5g13980 831246 glycosyl hydrolase family 38 protein F:in 6 functions;P:mannose metabolic process, carbohydrate metabolic process;C:apoplast, cell wall, plasma membrane, vacuole, plant-type cell wall;MOPBFA C.G. S.X.
0.01 3e-1 38 At3g52480 824413 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.01 3e-1 38 At3g11220 820292 Paxneb protein-related A subunit of Elongator, a histone acetyl transferase complex, consisting of six subunits (ELP1�ELP6), that copurifies with the elongating RNAPII in yeast and humans. Three Arabidopsis thaliana genes, encoding homologs of the yeast Elongator subunits ELP1, ELP3 (histone acetyl transferase), and ELP4 are responsible for the narrow leaf phenotype in elongata mutants and for reduced root growth that results from a decreased cell division rate. C.G. S.X.
0.01 3e-1 38 At2g23410 816873 ACPT (Arabidopsis cis-prenyltransferase) encodes cis-prenyltransferase C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 4e-1 38 Glycine max Gma.18.1.S1_at U21723.1 Hsp22.3 - 6e+0 At5g26330 plastocyanin-like domain-containing protein / mavicyanin, putative C.G. S.X.
0.01 2e+0 34 Hordeum vulgare HVSMEg0006G02r2_s_at HVSMEg0006G02r2 - - 1e+0 At1g10800 unknown protein C.G. S.X.
0.02 2e-1 40 Oryza sativa Os08g0351400 9636.m02585 - - 3e-3 At3g56810 unknown protein C.G. S.X.
0.04 4e-4 48 Populus trichocarpa Ptp.2888.1.S1_at DN502848 hypothetical protein - 1e+0 At5g06190 unknown protein C.G. S.X.
0.02 1e+0 36 Triticum aestivum Ta.26703.1.A1_at CD491616 - - 4e-1 At2g28780 unknown protein C.G. S.X.
0.01 9e-2 38 Vitis vinifera 1612809_at CD005512 - - 4e-3 At1g75890 family II extracellular lipase 2 (EXL2) C.G. S.X.
0.01 2e+0 34 Zea mays Zm.3979.1.S1_at AY106386.1 hypothetical protein LOC100273391 - 7e-13 At3g22845 emp24/gp25L/p24 protein-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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