CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g28755

Gene name UDP-D-glucuronate carboxy-lyase-related

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.55 70.6 At2g28755 817425 UDP-D-glucuronate carboxy-lyase-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPMFA S.X. H.G.
0.75 86.9 At4g08140 826362 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP S.X. H.G.
0.67 81.6 At1g54430 841885 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.57 73.8 At3g31910 822931 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOMF S.X. H.G.
0.47 61.2 At5g28880 3770842 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
711.7 100.0 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
393.9 100.0 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
393.2 100.0 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
225.4 100.0 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
198.8 100.0 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
167.6 100.0 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
163.4 99.9 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
155.0 99.9 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
153.8 99.9 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
152.1 99.9 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.24 9e-48 188 At2g28760 817426 NAD-dependent epimerase/dehydratase family protein F:coenzyme binding, binding, catalytic activity;P:cellular metabolic process, nucleotide-sugar metabolic process, metabolic process;C:plasma membrane;OBPMAFV C.G. S.X.
0.16 9e-11 65 At5g59290 836047 UXS3 (UDP-GLUCURONIC ACID DECARBOXYLASE 3) Encodes an isoform of UDP-glucuronic acid decarboxylase, which is predicted to be cytosolic by PSORT. This enzyme produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hemicellulose and pectin. UDP-xylose is also known to feedback regulate several cell wall biosynthetic enzymes. C.G. S.X.
0.05 2e-2 38 At3g46440 823794 UXS5 encodes a protein similar to UDP-glucuronic acid decarboxylase. UDP-glucuronic acid decarboxylase produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hemicellulose and pectin. UDP-xylose is also known to feedback regulate several cell wall biosynthetic enzymes. C.G. S.X.
0.02 1e+0 32 At5g02700 831837 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PF C.G. S.X.
0.01 1e+0 32 At4g29990 829122 light repressible receptor protein kinase F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 7e-3 40 Glycine max Gma.16417.1.S1_at BE822822 - - 5e-21 At5g59290 UXS3 (UDP-GLUCURONIC ACID DECARBOXYLASE 3) C.G. S.X.
0.05 6e-1 32 Hordeum vulgare HF04I11r_s_at HF04I11r - - 9e-1 At3g20340 - C.G. S.X.
0.04 2e+0 32 Oryza sativa Os03g0152400 CR279600 - 4-coumarate--CoA ligase 1 (EC 6.2.1.12) (4CL 1)(4-coumaroyl-CoA synthase 1) (Clone 4CL14) (Fragment) 6e-12 At4g05160 4-coumarate--CoA ligase, putative / 4-coumaroyl-CoA synthase, putative C.G. S.X.
0.08 3e-2 38 Populus trichocarpa PtpAffx.1740.1.A1_s_at CV249280 hypothetical protein - 1e-19 At3g46440 UXS5 C.G. S.X.
0.05 5e+0 30 Triticum aestivum Ta.8166.1.A1_at BQ161516 - - 8e-2 At1g04560 AWPM-19-like membrane family protein C.G. S.X.
0.05 1e+0 30 Vitis vinifera 1619690_at CB975062 - - 9e-1 At5g49800 - C.G. S.X.
0.04 2e+0 30 Zea mays Zm.18572.1.A1_at CO518352 hypothetical protein LOC100194072 - 2e+1 At4g13195 CLE44 (CLAVATA3/ESR-RELATED 44) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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