CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g28670

Gene name disease resistance-responsive family protein / fibroin-related

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At2g28670 817416 disease resistance-responsive family protein / fibroin-related F:molecular_function unknown;P:unknown;C:endomembrane system;BMOPFVA S.X. H.G.
1.00 100.0 At1g61590 842455 protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;MPOBFVA S.X. H.G.
1.00 100.0 At2g32300 817791 UCC1 (UCLACYANIN 1) Encodes a uclacyanin, a protein precursor that is closely related to precursors of stellacyanins and a blue copper protein from pea pods. S.X. H.G.
1.00 100.0 At2g36100 818183 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
1.00 100.0 At5g66390 836771 peroxidase 72 (PER72) (P72) (PRXR8) F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB S.X. H.G.
0.96 97.3 At4g13580 826991 disease resistance-responsive family protein F:molecular_function unknown;P:unknown;C:endomembrane system;PB S.X. H.G.
0.96 97.3 At1g30750 839955 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OBMFPV S.X. H.G.
0.92 96.0 At2g39430 818528 disease resistance-responsive protein-related / dirigent protein-related F:molecular_function unknown;P:lignan biosynthetic process;C:endomembrane system;PABFO S.X. H.G.
0.92 96.0 At2g27370 817280 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.92 96.0 At2g30210 817571 LAC3 (laccase 3) putative laccase, a member of laccase family of genes (17 members in Arabidopsis). S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
203.1 100.0 GSM184916 Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
165.4 100.0 GSM184917 Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
136.4 99.9 GSM184900 Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
108.8 99.9 GSM184898 Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
95.6 99.9 GSM266673 Arabidopsis, root cells, endodermis and quiescent center, -Fe, replicate 2 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
90.6 99.9 GSM184899 Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
83.9 99.9 GSM184918 Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
77.4 99.9 GSM133993 Birnbaum_1-26_J0571-2_Rep2_ATH1 GSE5749 A gene expression map of the Arabidopsis root
75.9 99.9 GSM266674 Arabidopsis, root cells, endodermis and quiescent center, -Fe, replicate 3 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
61.1 99.8 GSM133971 Birnbaum_1-1_src5-1_Rep1_ATH1 GSE5749 A gene expression map of the Arabidopsis root
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.37 0 831 At2g28671 6241140 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MBOFPVA C.G. S.X.
0.01 7e-1 36 At4g11860 826793 - F:molecular_function unknown;P:biological_process unknown;C:cytosol, nucleus, plasma membrane;MFOPB C.G. S.X.
0.01 7e-1 36 At3g24180 822004 catalytic/ glucosylceramidase F:glucosylceramidase activity, catalytic activity;P:glucosylceramide catabolic process, sphingolipid metabolic process;C:plasma membrane;BMPOAF C.G. S.X.
0.02 3e+0 34 At5g53580 835440 aldo/keto reductase family protein F:oxidoreductase activity, aldo-keto reductase activity;P:oxidation reduction;C:chloroplast;BOMFPA C.G. S.X.
0.02 3e+0 34 At5g48170 834869 SLY2 (SLEEPY2) encodes an F-box protein whose protein sequence is similar to SLY1, which belongs to SCF-SLY1 E3 ligase complex. SCF-SLY1 E3 ligase degrades DELLA proteins that are involved in promoting growth. Overexpression of SLY2 can partially compensate sly1-10 mutant phenotype of dwarfism. C.G. S.X.
0.01 3e+0 34 At4g34940 829646 ARO1 (ARMADILLO REPEAT ONLY 1) Armadillo repeat protein. One of a family of four in Arabidopsis. Located in the nucleus and cytoplasm of pollen vegetative cells, and in the cytoplasm of egg cells. Involved in the signaling network controlling tip growth and actin organization in the pollen tube. C.G. S.X.
0.01 3e+0 34 At4g18670 827601 protein binding / structural constituent of cell wall F:structural constituent of cell wall, protein binding;P:unknown;C:endomembrane system;MBPFOVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 4e-3 44 Glycine max GmaAffx.16995.1.S1_at BE211075 - - 1e-3 At2g28671 unknown protein C.G. S.X.
0.02 5e+0 32 Hordeum vulgare HVSMEc0006F13r2_at HVSMEc0006F13r2 - - 1e+0 At4g30070 LCR59 (Low-molecular-weight cysteine-rich 59) C.G. S.X.
0.02 3e-1 38 Oryza sativa Os04g0609900 CB673186 - Zn-finger, LSD1 type domain containing protein 1e-1 At2g28671 unknown protein C.G. S.X.
0.02 6e-2 40 Populus trichocarpa PtpAffx.218222.1.S1_at pmrna33772 hypothetical protein - 1e-2 At2g28671 unknown protein C.G. S.X.
0.02 4e-2 40 Triticum aestivum Ta.14935.1.S1_at CA685109 - - 2e-2 At2g28671 unknown protein C.G. S.X.
0.02 3e+0 32 Vitis vinifera 1613061_at CB346330 - - 3e+0 At5g42960 unknown protein C.G. S.X.
0.02 1e+0 34 Zea mays Zm.8216.1.A1_at CA400212 hypothetical protein LOC100280365 - 3e-8 At1g25350 OVA9 (ovule abortion 9) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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