CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g28540

Gene name nucleic acid binding / nucleotide binding / protein binding / zinc ion binding

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.29 30.3 At2g28540 817402 nucleic acid binding / nucleotide binding / protein binding / zinc ion binding F:protein binding, nucleotide binding, zinc ion binding, nucleic acid binding;P:unknown;C:unknown;OMFPB S.X. H.G.
0.61 76.7 At3g59000 825069 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.42 53.9 At3g51640 824327 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MOFBPVA S.X. H.G.
0.40 50.8 At1g05910 837101 cell division cycle protein 48-related / CDC48-related F:nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;BMOFPAV S.X. H.G.
0.40 50.8 At4g29790 829101 unknown protein F:molecular_function unknown;P:unknown;C:unknown;OMPFBV S.X. H.G.
0.36 43.6 At3g12640 820444 RNA binding / nucleic acid binding / nucleotide binding F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFBOV S.X. H.G.
0.32 35.7 At3g21290 821683 dentin sialophosphoprotein-related F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BMOFPVA S.X. H.G.
0.21 15.8 At2g32760 817836 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOB S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
20.0 99.6 E-ATMX-35-raw-cel-1574334816
19.8 99.6 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
19.6 99.6 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
19.2 99.6 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
18.3 99.5 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
16.9 99.5 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
16.8 99.5 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
16.2 99.5 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
16.1 99.5 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
16.1 99.5 E-ATMX-35-raw-cel-1574334832
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.14 5e-28 127 At5g60170 836139 RNA binding / nucleic acid binding / nucleotide binding / protein binding / zinc ion binding F:protein binding, RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;OMBFP C.G. S.X.
0.14 3e-20 101 At3g45630 823705 RNA recognition motif (RRM)-containing protein F:protein binding, RNA binding, zinc ion binding, nucleotide binding, nucleic acid binding;P:unknown;C:unknown;OBMFPV C.G. S.X.
0.01 3e-1 38 At5g59500 836069 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOAFPM C.G. S.X.
0.01 3e-1 38 At4g15150 827181 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMPOFVA C.G. S.X.
0.01 3e-1 38 At3g14760 820704 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.00 3e-1 38 At1g70320 843368 UPL2 (UBIQUITIN-PROTEIN LIGASE 2) encodes a ubiquitin-protein ligase-like protein containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. C.G. S.X.
0.00 3e-1 38 At1g55860 842036 UPL1 (UBIQUITIN-PROTEIN LIGASE 1) encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. C.G. S.X.
0.01 1e+0 36 At1g05260 837028 RCI3 (RARE COLD INDUCIBLE GENE 3) Encodes a cold-inducible cationic peroxidase that is involved in the stress response. In response to low temperature, RCI3 transcripts accumulate in the aerial part and in roots of etiolated seedlings but only in roots of light-grown seedlings. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 7e-37 157 Glycine max GmaAffx.21196.1.S1_at AW567776 - - 2e-29 At5g60170 RNA binding / nucleic acid binding / nucleotide binding / protein binding / zinc ion binding C.G. S.X.
0.01 2e-1 38 Hordeum vulgare Contig16671_at Contig16671 - - 5e-1 At1g06190 ATP binding / ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism C.G. S.X.
0.03 3e-3 46 Oryza sativa Os12g0102400 AK103750.1 - RNA-binding region RNP-1 (RNA recognition motif)domain containing protein 6e-16 At3g45630 RNA recognition motif (RRM)-containing protein C.G. S.X.
0.23 1e-47 192 Populus trichocarpa PtpAffx.204987.1.S1_at pmrna9878 - - 6e-77 At5g60170 RNA binding / nucleic acid binding / nucleotide binding / protein binding / zinc ion binding C.G. S.X.
0.01 1e+0 36 Triticum aestivum TaAffx.81591.1.S1_at CA684254 - - 1e+0 At5g56850 unknown protein C.G. S.X.
0.01 2e+0 34 Vitis vinifera 1613197_at CF372765 hypothetical protein LOC100265995 - 9e-15 At4g35750 Rho-GTPase-activating protein-related C.G. S.X.
0.01 2e+0 34 Zea mays ZmAffx.1201.1.A1_at BE128817 - - 8e-1 At2g18970 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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