Gene omics information

Query gene ID At2g28490
Gene name cupin family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.8994.6At2g28490817397cupin family proteinF:nutrient reservoir activity;P:biological_process unknown;C:endomembrane system;BMPOFVAS.X.H.G.
1.00100.0At3g27660822388OLEO4 (OLEOSIN 4)Encodes oleosin4 (Plant Cell, 2006, 18:1961), a protein found in oil bodies, involved in seed lipid accumulation. Functions in freezing tolerance of seeds. Note: also referred to as OLE3 in Plant Journal 2008, 55:798.S.X.H.G.
1.00100.0At4g25140828617OLEO1 (OLEOSIN 1)Encodes oleosin1, a protein found in oil bodies, involved in seed lipid accumulation. Suppression of OLEO1 (and OLEO2) resulted in an aberrant phenotype of embryo cells that contain unusually large oilbodies that are not normally observed in seeds. Changes in the size of oilbodies caused disruption of storage organelles, altering accumulation of lipids and proteins and causing delay in germination. Functions in freezing tolerance of seeds.S.X.H.G.
0.8994.6At3g01570821106glycine-rich protein / oleosinF:molecular_function unknown;P:lipid storage;C:monolayer-surrounded lipid storage body, integral to membrane, membrane;PS.X.H.G.
0.8693.1At3g22640821835PAP85F:nutrient reservoir activity;P:biological_process unknown;C:plant-type cell wall;POMS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
263.8100.0GSM10456WT Post-Mature Green Seed 2GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
208.6100.0GSM10454WT Post-Mature Green Seed 1GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
201.9100.0GSM131707ATGE_84_BGSE5634AtGenExpress: Developmental series (siliques and seeds)
199.9100.0GSM10453WT Mature Green Seed 2GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
193.9100.0GSM131704ATGE_83_BGSE5634AtGenExpress: Developmental series (siliques and seeds)
193.8100.0GSM10451WT Mature Green Seed 1GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
187.9100.0GSM131705ATGE_83_CGSE5634AtGenExpress: Developmental series (siliques and seeds)
177.7100.0E-ATMX-1-raw-cel-1112746209
171.4100.0GSM131701ATGE_82_BGSE5634AtGenExpress: Developmental series (siliques and seeds)
170.3100.0GSM131703ATGE_83_AGSE5634AtGenExpress: Developmental series (siliques and seeds)
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.022e-138At5g49920835055octicosapeptide/Phox/Bem1p (PB1) domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFC.G.S.X.
0.018e-136At3g11980820372MS2 (MALE STERILITY 2)Similar to fatty acid reductases.C.G.S.X.
0.018e-136At3g51540824317unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBVPAC.G.S.X.
0.018e-136At2g20370816556MUR3 (MURUS 3)Encodes a xyloglucan galactosyltransferase located in the membrane of Golgi stacks that is involved in the biosynthesis of fucose. It is also involved in endomembrane organization. It is suggested that it is a dual-function protein that is responsible for actin organization and the synthesis of cell wall materials.C.G.S.X.
0.018e-136At2g29190817468APUM2 (Arabidopsis Pumilio 2)F:RNA binding, binding;P:biological_process unknown;C:cellular_component unknown;FOMPBC.G.S.X.
0.018e-136At2g29200817469APUM1 (Arabidopsis Pumilio 1)F:RNA binding, binding;P:unknown;C:cellular_component unknown;FOMPC.G.S.X.
0.013e+034At5g35735833550auxin-responsive family proteinF:unknown;P:unknown;C:plasma membrane, membrane;PMFOBC.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.022e-242Glycine maxGmaAffx.93248.1.S1_s_atCF808973--6e-3At2g37390heavy-metal-associated domain-containing proteinC.G.S.X.
0.022e+034Hordeum vulgareHB11N11r_s_atHB11N11r--3e+0At3g03626unknown proteinC.G.S.X.
0.014e-138Oryza sativaOs01g0283300AK068117.1-Hypothetical protein5e-2At5g19570unknown proteinC.G.S.X.
0.021e+036Populus trichocarpaPtpAffx.91597.1.S1_atDN496124hypothetical protein-1e+0At4g31860protein phosphatase 2C, putative / PP2C, putativeC.G.S.X.
0.028e-136Triticum aestivumTaAffx.75735.1.A1_atCD889870--9e-1At5g66070zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.071e-654Vitis vinifera1617848_atCB346603hypothetical protein LOC100253668 /// hypothetical LOC100267244-2e-6At2g28490cupin family proteinC.G.S.X.
0.011e+034Zea maysZm.9958.2.A1_atCA399148--2e+0At5g17480APC1 (ARABIDOPSIS POLLEN CALCIUM-BINDING PROTEIN 1)C.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage