CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g28270

Gene name DC1 domain-containing protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.44 57.2 At2g28270 817373 DC1 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO S.X. H.G.
1.00 100.0 At1g70880 843425 Bet v I allergen family protein F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P S.X. H.G.
0.86 93.1 At5g37450 833722 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.67 81.6 At4g07820 826263 pathogenesis-related protein, putative F:molecular_function unknown;P:unknown;C:endomembrane system, extracellular region;PMFBO S.X. H.G.
0.67 81.6 At4g08620 826426 SULTR1 High affinity sulfate transporter. Contains STAS domain, essential for sulfur uptake function. Expressed in roots and guard cells. Up-regulated by sulfur deficiency. Down-regulated by cytokinin. Localized to the plasma membrane. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
215.9 100.0 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
168.3 100.0 E-MEXP-828-raw-cel-1156922829
122.8 99.9 E-MEXP-828-raw-cel-1156922923
114.9 99.9 E-MEXP-828-raw-cel-1156922684
114.7 99.9 E-MEXP-828-raw-cel-1156922318
105.5 99.9 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
105.1 99.9 E-MEXP-828-raw-cel-1156922772
104.0 99.9 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
102.3 99.9 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
97.4 99.9 E-MEXP-828-raw-cel-1156922708
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.57 4e-87 321 At2g44380 819045 DC1 domain-containing protein F:unknown;P:unknown;C:unknown;PMO C.G. S.X.
0.41 3e-57 222 At2g44390 819046 DC1 domain-containing protein F:unknown;P:unknown;C:unknown;PO C.G. S.X.
0.41 1e-31 137 At5g43520 834372 DC1 domain-containing protein F:unknown;P:unknown;C:unknown;POMF C.G. S.X.
0.20 8e-27 121 At2g17740 816283 DC1 domain-containing protein F:unknown;P:unknown;C:cellular_component unknown;PO C.G. S.X.
0.18 5e-19 95 At2g44370 819044 DC1 domain-containing protein F:unknown;P:unknown;C:unknown;POMF C.G. S.X.
0.15 4e-7 56 At5g40590 834057 DC1 domain-containing protein F:unknown;P:unknown;C:cellular_component unknown;POF C.G. S.X.
0.01 2e-2 40 At3g24090 821995 glutamine-fructose-6-phosphate transaminase (isomerizing)/ sugar binding / transaminase F:sugar binding, transaminase activity, glutamine-fructose-6-phosphate transaminase (isomerizing) activity;P:carbohydrate biosynthetic process, carbohydrate metabolic process, metabolic process;C:cytoplasm;OBMAFPV C.G. S.X.
0.04 9e-2 38 At4g21740 828262 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.02 9e-2 38 At4g36220 829779 FAH1 (FERULIC ACID 5-HYDROXYLASE 1) encodes ferulate 5-hydroxylase (F5H). Involved in lignin biosynthesis. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e-1 38 Glycine max GmaAffx.46403.1.S1_at BM523382 - - 1e+1 At5g13810 glutaredoxin family protein C.G. S.X.
0.04 7e-1 34 Hordeum vulgare HF21N04r_at HF21N04r - - 2e+0 At4g19150 ankyrin repeat family protein C.G. S.X.
0.03 2e-1 38 Oryza sativa OsAffx.5823.1.S1_at - - - 0 C.G. S.X.
0.03 2e+0 34 Populus trichocarpa PtpAffx.70114.1.A1_at CV231521 - - 7e-8 At4g36870 BLH2 (BEL1-LIKE HOMEODOMAIN 2) C.G. S.X.
0.04 4e-1 36 Triticum aestivum TaAffx.31101.1.S1_at CA619504 - - 1e+1 At1g51960 IQD27 (IQ-domain 27) C.G. S.X.
0.03 4e-1 34 Vitis vinifera 1609529_at CF372558 - - 4e-1 At4g35900 FD C.G. S.X.
0.04 3e+0 32 Zea mays ZmAffx.1083.1.A1_at AI974922 - - 1e+0 At1g59830 PP2A-1 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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