Gene omics information

Query gene ID At2g28260
Gene name ATCNGC15
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At2g28260817372ATCNGC15member of Cyclic nucleotide gated channel familyS.X.H.G.
0.4253.9At1g50260841448NTMC2T5.1 (N-TERMINAL-TRANSMEMBRANE-C2 DOMAIN TYPE 5.1)F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMFOBS.X.H.G.
0.4152.4At5g58340835946DNA bindingF:DNA binding;P:regulation of transcription;C:unknown;PMOFS.X.H.G.
0.4152.4At2g20210816540leucine-rich repeat family proteinF:protein binding;P:unknown;C:endomembrane system;MOPBFS.X.H.G.
0.3948.4At1g70630843400-F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;POS.X.H.G.
0.3846.7At2g19280816445pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POMFBAS.X.H.G.
0.3745.0At1g270708395965'-AMP-activated protein kinase-relatedF:unknown;P:unknown;C:unknown;MFPOBAS.X.H.G.
0.3745.0At5g08510830750pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMABS.X.H.G.
0.3643.6At3g13682820577LDL2 (LSD1-LIKE2)Encodes a homolog of human Lysine-Specific Demethylase1. Involved in H3K4 methylation of target genes including the flowering loci FLC and FWA.S.X.H.G.
0.3643.6At5g22820832345bindingF:binding;P:biological_process unknown;C:cellular_component unknown;MPS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
263.6100.0GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
204.1100.0E-ATMX-33-raw-cel-1562596241
190.7100.0GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
185.8100.0GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
163.299.9E-MEXP-1443-raw-cel-1581869515
149.699.9GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
149.399.9GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
138.399.9GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
121.999.9GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
118.699.9GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.071e-965At1g15990838169ATCNGC7 (CYCLIC NUCLEOTIDE GATED CHANNEL 7)member of Cyclic nucleotide gated channel familyC.G.S.X.
0.052e-861At3g48010823956ATCNGC16member of Cyclic nucleotide gated channel familyC.G.S.X.
0.077e-859At1g19780838566ATCNGC8 (CYCLIC NUCLEOTIDE GATED CHANNEL 8)member of Cyclic nucleotide gated channel familyC.G.S.X.
0.081e-656At4g30560829179ATCNGC9 (CYCLIC NUCLEOTIDE GATED CHANNEL 9)member of Cyclic nucleotide gated channel familyC.G.S.X.
0.074e-654At2g24610816997ATCNGC14member of Cyclic nucleotide gated channel familyC.G.S.X.
0.063e-448At5g14870831339CNGC18 (CYCLIC NUCLEOTIDE-GATED CHANNEL 18)Encodes a member of the cyclic nucleotide gated channel family that is asymmetrically localized to the plasma membrane at the growing tip of the pollen tube and is involved in pollen tube growth. It likely directly transduces a cNMP signal into an ion flux that can produce a localized signal capable of regulating the pollen tip-growth machinery.C.G.S.X.
0.043e-448At5g57940835905ATCNGC5 (CYCLIC NUCLEOTIDE GATED CHANNEL 5)member of Cyclic nucleotide gated channel familyC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.191e-28129Glycine maxGmaAffx.61020.1.S1_atBU927022--2e-29At2g28260ATCNGC15C.G.S.X.
0.042e+034Hordeum vulgareContig14052_atContig14052--4e-10At5g53130CNGC1 (CYCLIC NUCLEOTIDE GATED CHANNEL 1)C.G.S.X.
0.032e-346Oryza sativaOs02g0255000AK112041.1-Cyclic nucleotide-gated ion channel 1 (AtCNGC1)(Cyclic nucleotide-and calmodulin-regulated ion channel1)2e-6At3g48010ATCNGC16C.G.S.X.
0.281e-759Populus trichocarpaPtpAffx.224456.1.S1_atpmrna43011hypothetical protein-8e-8At2g28260ATCNGC15C.G.S.X.
0.043e-138Triticum aestivumTa.16340.1.S1_atCA604920--4e-3At2g23980ATCNGC6C.G.S.X.
0.028e-238Vitis vinifera1613268_atCB342482hypothetical protein LOC100260148-2e-3At3g48010ATCNGC16C.G.S.X.
0.017e+032Zea maysZm.3252.1.A1_atCF00454440S ribosomal protein S12-2e-24At1g1593040S ribosomal protein S12 (RPS12A)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0006811The directed movement of charged atoms or small charged molecules into, out of, within or between cells.
LGO:0006813The directed movement of potassium ions (K+) into, out of, within or between cells.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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