CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g28180

Gene name ATCHX8

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.61 76.7 At2g28180 817364 ATCHX8 member of Putative Na+/H+ antiporter family S.X. H.G.
0.89 94.6 At2g26850 817226 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMO S.X. H.G.
0.80 89.8 At4g39610 830115 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PB S.X. H.G.
0.60 75.7 At1g17540 838328 kinase F:kinase activity;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVA S.X. H.G.
0.33 38.1 At5g42490 834256 kinesin motor family protein F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex;MOFPBVA S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
219.1 100.0 GSM154508 Arabidopsis growing pollen tubes rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
208.6 100.0 E-MEXP-1138-raw-cel-1432772970
194.7 100.0 E-MEXP-285-raw-cel-440782725
180.4 100.0 GSM239251 Columbia glabrous (C24) wild type pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
178.4 100.0 GSM239253 CaMV::DME pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
165.9 100.0 GSM154506 Arabidopsis hydrated pollen grains rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
155.9 99.9 E-MEXP-285-raw-cel-440782791
146.5 99.9 E-MEXP-1138-raw-cel-1432773130
145.3 99.9 E-MEXP-1138-raw-cel-1432772874
145.2 99.9 E-MEXP-1138-raw-cel-1432772842
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.04 5e-3 44 At1g08140 837335 ATCHX6A (CATION/H+ EXCHANGER 6A) member of Putative Na+/H+ antiporter family C.G. S.X.
0.02 2e-2 42 At3g44900 823624 ATCHX4 (CATION/H+ EXCHANGER 4) member of Putative Na+/H+ antiporter family C.G. S.X.
0.01 3e-1 38 At5g67580 836894 TRB2 Encodes a telomeric DNA binding protein. In vitro, the protein preferentially binds double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand. C.G. S.X.
0.01 3e-1 38 At5g22900 832354 ATCHX3 member of Putative Na+/H+ antiporter family C.G. S.X.
0.01 3e-1 38 At4g11110 826712 SPA2 (SPA1-RELATED 2) Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA2 primarily regulates seedling development in darkness and has little function in light-grown seedlings or adult plants. C.G. S.X.
0.01 3e-1 38 At3g44930 823627 ATCHX10 (CATION/H+ EXCHANGER 10) member of Putative Na+/H+ antiporter family C.G. S.X.
0.01 3e-1 38 At1g01230 839331 ORMDL family protein F:molecular_function unknown;P:protein folding;C:integral to membrane, endoplasmic reticulum;MFPO C.G. S.X.
0.03 3e-1 38 At1g08150 837336 ATCHX5 member of Putative Na+/H+ antiporter family C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 5e-1 38 Glycine max GmaAffx.33666.1.S1_at BU965182 - - 8e-1 At2g19200 unknown protein C.G. S.X.
0.01 6e-1 36 Hordeum vulgare Contig21185_at Contig21185 - - 4e-1 At3g24710 - C.G. S.X.
0.01 3e+0 36 Oryza sativa OsAffx.3987.1.S1_at - - - 0 C.G. S.X.
0.01 4e-1 38 Populus trichocarpa PtpAffx.53711.3.S1_at DN500662 hypothetical protein - 3e-14 At1g31660 - C.G. S.X.
0.01 1e+0 36 Triticum aestivum TaAffx.24284.1.S1_at CA721832 - - 2e-1 At4g36430 peroxidase, putative C.G. S.X.
0.02 2e+0 34 Vitis vinifera 1621346_at CB978597 hypothetical protein LOC100263108 - 8e-2 At1g74440 unknown protein C.G. S.X.
0.01 5e-1 36 Zea mays Zm.14789.2.S1_a_at BM380358 hypothetical protein LOC100193117 /// hypothetical protein LOC100279921 - 3e-1 At4g15150 glycine-rich protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0006812 The directed movement of cations, atoms or small molecules with a net positive charge, into, out of, within or between cells.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage