CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g28170

Gene name ATCHX7

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.33 38.1 At2g28170 817363 ATCHX7 member of Putative Na+/H+ antiporter family S.X. H.G.
0.67 81.6 At3g58390 825008 eukaryotic release factor 1 family protein / eRF1 family protein F:translation release factor activity;P:translational termination, translation;C:nucleus;OAMFPV S.X. H.G.
0.67 81.6 At5g39630 833959 vesicle transport v-SNARE family protein F:SNARE binding, receptor activity;P:membrane fusion, intra-Golgi vesicle-mediated transport;C:membrane;OMFPBAV S.X. H.G.
0.63 78.1 At1g65630 842874 DegP3 (DegP protease 3) Encodes a putative DegP protease. S.X. H.G.
0.57 73.8 At1g51900 841617 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;OMBFPVA S.X. H.G.
0.53 68.6 At4g21240 827873 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.50 65.3 At5g37910 833770 seven in absentia (SINA) family protein F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:multicellular organismal development, ubiquitin-dependent protein catabolic process, protein ubiquitination;C:nucleus;MPOF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
506.9 100.0 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
370.9 100.0 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
343.0 100.0 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
253.5 100.0 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
241.7 100.0 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
235.6 100.0 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
235.1 100.0 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
225.2 100.0 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
221.5 100.0 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
221.4 100.0 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 1e-3 46 At2g13620 815847 ATCHX15 member of Putative Na+/H+ antiporter family C.G. S.X.
0.06 1e-3 46 At1g08140 837335 ATCHX6A (CATION/H+ EXCHANGER 6A) member of Putative Na+/H+ antiporter family C.G. S.X.
0.01 1e-2 42 At3g44900 823624 ATCHX4 (CATION/H+ EXCHANGER 4) member of Putative Na+/H+ antiporter family C.G. S.X.
0.01 2e-1 38 At1g08150 837336 ATCHX5 member of Putative Na+/H+ antiporter family C.G. S.X.
0.02 9e-1 36 At1g08135 837334 CHX6B (CATION/H+ EXCHANGER 6B) F:monovalent cation:proton antiporter activity;P:cation transport;C:integral to membrane;BPFAO C.G. S.X.
0.01 9e-1 36 At1g19050 838487 ARR7 (RESPONSE REGULATOR 7) Encodes a member of the Arabidopsis response regulator (ARR) family, most closely related to ARR15. A two-component response regulator protein containing a phosphate accepting domain in the receiver domain but lacking a DNA binding domain in the output domain. Involved in response to cytokinin and meristem stem cell maintenance. Arr7 protein is stabilized by cytokinin. C.G. S.X.
0.01 9e-1 36 At1g55570 842006 sks12 (SKU5 Similar 12) F:oxidoreductase activity, copper ion binding;P:unknown;C:endomembrane system;FBPMOA C.G. S.X.
0.01 4e+0 34 At5g60790 836200 ATGCN1 member of GCN subfamily C.G. S.X.
0.01 4e+0 34 At5g27350 832794 SFP1 Encodes a sugar-porter family protein that is induced during leaf senescence. The increase in its gene expression during leaf senescence is paralleled by an accumulation of monosaccharides. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 5e+0 34 Glycine max GmaAffx.35364.4.S1_at AW706990 - - 9e-13 At4g16143 IMPA-2 (IMPORTIN ALPHA ISOFORM 2) C.G. S.X.
0.01 4e-1 36 Hordeum vulgare Contig6203_at Contig6203 - - 1e-3 At1g70110 lectin protein kinase family protein C.G. S.X.
0.01 3e-2 42 Oryza sativa Os09g0487600 9637.m02770 - Glycoside hydrolase, family 28 protein 8e-4 At3g57790 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein C.G. S.X.
0.02 5e+0 34 Populus trichocarpa PtpAffx.202678.1.S1_at pmrna5339 hypothetical protein - 1e+0 At1g68200 zinc finger (CCCH-type) family protein C.G. S.X.
0.01 4e+0 34 Triticum aestivum TaAffx.25555.4.S1_at CA636241 - - 2e+1 Atmg00590 - C.G. S.X.
0.01 3e-1 36 Vitis vinifera 1622796_at CF208469 hypothetical protein LOC100247561 - 2e-5 At5g05920 DHS (DEOXYHYPUSINE SYNTHASE) C.G. S.X.
0.02 4e-1 36 Zea mays Zm.3382.1.A1_at AI666153 hypothetical protein LOC100275576 - 4e+0 At4g36500 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0006812 The directed movement of cations, atoms or small molecules with a net positive charge, into, out of, within or between cells.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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