CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g28160

Gene name FRU (FER-LIKE REGULATOR OF IRON UPTAKE)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.60 75.7 At2g28160 817362 FRU (FER-LIKE REGULATOR OF IRON UPTAKE) Encodes a putative transcription factor that regulates iron uptake responses. mRNA is detected in the outer cell layers of the root and accumulates in response to iron deficiency. The expression of many iron-regulated genes is dependent on FIT1. It specifically regulates FRO2 at the level of mRNA accumulation and IRT1 at the level of protein accumulation.Similar to FER in tomato and is a regulator of iron uptake. S.X. H.G.
0.89 94.6 At5g03570 831787 ATIREG2 (IRON-REGULATED PROTEIN 2) Encodes a tonoplast localized nickel transport protein. S.X. H.G.
0.67 81.6 At1g74760 - - - S.X. H.G.
0.67 81.6 At3g58810 825050 MTPA2 (METAL TOLERANCE PROTEIN A2) Member of Zinc transporter (ZAT) family. Contributes to basic cellular Zn tolerance and controls Zn partitioning, particularly under conditions of high rates of Zn influx into the root symplasm. Localizes to the vacuolar membrane. S.X. H.G.
0.46 59.8 At1g08320 837353 bZIP family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMOF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
277.5 100.0 GSM265432 Arabidopsis, root, longitudinal zone 4, -Fe conditions, rep 1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
148.5 99.9 GSM265433 Arabidopsis, root, longitudinal zone 4, -Fe conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
105.5 99.9 GSM265474 Arabidopsis, whole roots, -Fe, 72 hour, rep 2 GSE10502 Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
74.8 99.9 GSM265471 Arabidopsis, whole roots, -Fe, 48 hour, rep 1 GSE10502 Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
72.7 99.9 GSM75521 slr-1 6h NAA replicate 2 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
67.3 99.8 GSM142733 CH001_ATH1_A012-Hampt-c1c GSE6161 Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
66.0 99.8 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
65.5 99.8 GSM265473 Arabidopsis, whole roots, -Fe, 72 hour, rep 1 GSE10502 Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
63.5 99.8 GSM265430 Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
59.0 99.8 GSM265472 Arabidopsis, whole roots, -Fe, 48 hour, rep 2 GSE10502 Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
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Homologous genes

Paralogous genes

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HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.04 2e-6 54 At5g57150 835821 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMVO C.G. S.X.
0.02 3e-2 40 At4g39560 830110 kelch repeat-containing F-box family protein F:unknown;P:biological_process unknown;C:cellular_component unknown;MPBOVFA C.G. S.X.
0.04 1e-1 38 At5g23760 832441 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;OMPFABV C.G. S.X.
0.01 1e-1 38 At5g46600 834703 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOF C.G. S.X.
0.02 1e-1 38 At5g63290 836449 coproporphyrinogen oxidase-related F:oxidoreductase activity, iron-sulfur cluster binding, coproporphyrinogen oxidase activity, catalytic activity;P:porphyrin biosynthetic process;C:chloroplast, cytoplasm;BOAMP C.G. S.X.
0.02 1e-1 38 At3g11180 820289 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, iron ion binding;P:unknown;C:cellular_component unknown;POBFM C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e-1 38 Glycine max GmaAffx.69859.1.S1_at CD394583 - - 1e+0 At1g60985 SCRL6 (SCR-Like 6) C.G. S.X.
0.04 2e-1 36 Hordeum vulgare Contig11808_at Contig11808 - - 7e-10 At4g16430 basic helix-loop-helix (bHLH) family protein C.G. S.X.
0.03 9e-1 36 Oryza sativa Os09g0251100 9637.m00535 - Protein kinase domain containing protein 3e+0 At3g63360 defensin-related C.G. S.X.
0.20 7e-10 65 Populus trichocarpa PtpAffx.205078.1.S1_at pmrna10063 hypothetical protein - 5e-10 At2g28160 FRU (FER-LIKE REGULATOR OF IRON UPTAKE) C.G. S.X.
0.04 2e+0 34 Triticum aestivum TaAffx.31773.1.S1_at CA607934 - - 4e-2 At5g23760 heavy-metal-associated domain-containing protein C.G. S.X.
0.03 1e-1 36 Vitis vinifera 1615882_at CF204860.1 - - 6e-6 At4g24175 unknown protein C.G. S.X.
0.02 3e+0 32 Zea mays Zm.17484.1.A1_at CK394771 hypothetical protein LOC100191396 - 1e+0 At3g15250 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0034756 Any process that modulates the frequency, rate or extent of the directed movement of iron ions (Fe) into, out of, within or between cells.
X GO:0010039 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an iron ion stimulus.
S GO:0045449 Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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