CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g28120

Gene name nodulin family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.26 24.4 At2g28120 817358 nodulin family protein F:unknown;P:N-terminal protein myristoylation;C:plasma membrane;OBPFMA S.X. H.G.
0.11 4.1 At2g25200 817058 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.09 2.8 At2g30930 817644 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast, plasma membrane, membrane;BOFMPV S.X. H.G.
0.08 2.3 At4g30270 829150 MERI5B (meristem-5) encodes a protein similar to endo xyloglucan transferase in sequence. It is also very similar to BRU1 in soybean, which is involved in brassinosteroid response. S.X. H.G.
0.04 0.9 At1g70290 843365 ATTPS8 Encodes an enzyme putatively involved in trehalose biosynthesis. Though the protein has both trehalose-6-phosphate synthase (TPS)-like and trehalose-6-phosphate phosphatase (TPP)-like domains, neither activity has been detected in enzymatic assays nor has the protein been able to complement yeast TPS or TPP mutants. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
103.1 99.9 E-MEXP-1797-raw-cel-1669767940
85.3 99.9 E-MEXP-1797-raw-cel-1669768030
58.5 99.8 E-MEXP-1443-raw-cel-1581869921
53.2 99.8 GSM205185 protoplast_KIN10_rep2 GSE8257 Identification of KIN10-target genes in Arabidopsis mesophyll cells
52.2 99.8 E-MEXP-1797-raw-cel-1669767967
45.3 99.8 GSM133304 RIKEN-NAKABAYASHI1B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
43.8 99.8 GSM311296 Laser capture microdissected (LCM) general seed coat at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
35.3 99.7 GSM133303 RIKEN-NAKABAYASHI1A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
27.6 99.7 GSM204069 protoplast_hypoxia_rep1 GSE8248 Identification of hypoxia-inducible genes in Arabidopsis mesophyll cells
20.2 99.6 E-TABM-63-raw-cel-681137124
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.04 1e-2 42 At2g39210 818506 nodulin family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBPFMA C.G. S.X.
0.02 1e-2 42 At2g34350 817997 nodulin-related F:unknown;P:unknown;C:endomembrane system;BPOFAM C.G. S.X.
0.01 2e-1 38 Atcg01130 - - hypothetical protein C.G. S.X.
0.02 2e-1 38 At5g50260 835091 cysteine proteinase, putative F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPVBAF C.G. S.X.
0.01 2e-1 38 At3g18370 821366 ATSYTF F:molecular_function unknown;P:biological_process unknown;C:unknown;MPOF C.G. S.X.
0.01 2e-1 38 At2g16800 816181 high-affinity nickel-transport family protein F:nickel ion transmembrane transporter activity, metal ion binding;P:nickel ion transport, metal ion transport;C:integral to membrane, chloroplast;OBPA C.G. S.X.
0.02 9e-1 36 At4g27890 828902 nuclear movement family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFB C.G. S.X.
0.01 9e-1 36 At4g38540 830011 monooxygenase, putative (MO2) F:monooxygenase activity;P:metabolic process;C:unknown;BFOPAM C.G. S.X.
0.01 9e-1 36 At4g14280 827069 binding F:binding;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 3e-1 38 Glycine max GmaAffx.26311.1.S1_at BE348003 - - 5e-2 At2g28120 nodulin family protein C.G. S.X.
0.01 2e+0 34 Hordeum vulgare Contig17523_at Contig17523 - - 7e-2 At4g08230 glycine-rich protein C.G. S.X.
0.01 2e+0 36 Oryza sativa OsAffx.27204.1.S1_x_at - - - 0 C.G. S.X.
0.14 2e-11 71 Populus trichocarpa PtpAffx.219784.1.S1_at pmrna35863 hypothetical protein - 2e-11 At2g28120 nodulin family protein C.G. S.X.
0.03 2e-1 38 Triticum aestivum Ta.4025.1.A1_at BJ257145 - - 1e-1 At2g28120 nodulin family protein C.G. S.X.
0.02 7e-2 38 Vitis vinifera 1622426_at CF205289.1 - - 9e-5 At2g39210 nodulin family protein C.G. S.X.
0.01 6e+0 32 Zea mays ZmAffx.226.1.A1_at AI670238 - - 1e+1 At5g49710 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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