Gene omics information

Query gene ID At2g27790
Gene name nucleic acid binding / nucleotide binding
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4355.3At2g27790817326nucleic acid binding / nucleotide bindingF:nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPOFS.X.H.G.
0.5773.8At4g295308290742,3-diketo-5-methylthio-1-phosphopentane phosphatase familyF:phosphatase activity, catalytic activity;P:metabolic process;C:cellular_component unknown;MPOBFS.X.H.G.
0.4050.8At1g73150843646GTE3 (GLOBAL TRANSCRIPTION FACTOR GROUP E 3)Bromodomain and extra terminal domain family protein. Binds to acetyl-histone H3. Binding is reduced when GTE3 is SUMOylated by SIZ1.S.X.H.G.
0.2014.4At4g00420828061double-stranded RNA-binding domain (DsRBD)-containing proteinF:double-stranded RNA binding, RNA binding;P:biological_process unknown;C:intracellular, chloroplast;PS.X.H.G.
0.071.9At5g65560836682pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
424.2100.0GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
152.699.9GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
135.099.9GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
129.599.9GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
124.699.9GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
122.299.9GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
117.799.9GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
117.499.9GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
106.399.9GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
105.199.9GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.277e-98357At5g27300832788-F:molecular_function unknown;P:biological_process unknown;C:unknown;POMFAC.G.S.X.
0.024e-136At5g04890830370RTM2 (RESTRICTED TEV MOVEMENT 2)Specifically restricts the long-distance movement of tobacco etch potyvirus (TEV) without involving either hypersensitive cell death or systemic acquired resistance. Multidomain protein containing an N-terminal region with high similarity to plant small heat shock proteins (HSPs).C.G.S.X.
0.034e-136At3g19900821528unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;OBPFC.G.S.X.
0.024e-136At3g27320822351hydrolaseF:hydrolase activity;P:metabolic process;C:unknown;BOPFMAVC.G.S.X.
0.031e+034At4g25600828665ShTK domain-containing proteinF:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, iron ion binding;P:protein metabolic process;C:unknown;MPBOVC.G.S.X.
0.021e+034At1g69540843289AGL94 (AGAMOUS-LIKE 94)Encodes a member of the MIKC (MADS box, Keratin binding domain, and C terminal domain containing )family of transcriptional regulators.C.G.S.X.
0.041e+034At1g66100842924thionin, putativePredicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.C.G.S.X.
0.016e+032At5g60960836217pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.032e+034Glycine maxGmaAffx.22785.1.S1_atBG653504--1e-2At3g56910PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5)C.G.S.X.
0.042e-136Hordeum vulgareEBem09_SQ002_L08_x_atEBem09_SQ002_L08--1e-1At2g27790nucleic acid binding / nucleotide bindingC.G.S.X.
0.034e-240Oryza sativaOs02g0105000AK060064.1-RNA-binding region RNP-1 (RNA recognition motif)domain containing protein4e-2At2g27790nucleic acid binding / nucleotide bindingC.G.S.X.
0.256e-1685Populus trichocarpaPtpAffx.204374.1.S1_atpmrna8595hypothetical protein-4e-16At2g27790nucleic acid binding / nucleotide bindingC.G.S.X.
0.036e+032Triticum aestivumTaAffx.53695.1.S1_atCA689939--4e+0At2g27790nucleic acid binding / nucleotide bindingC.G.S.X.
0.032e+032Vitis vinifera1616122_atCF211952hypothetical protein LOC100260149-2e+0At5g03780TRFL10 (TRF-LIKE 10)C.G.S.X.
0.032e+032Zea maysZm.13295.1.A1_atCO531194--2e+0At2g19880ceramide glucosyltransferase, putativeC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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