CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g27790

Gene name nucleic acid binding / nucleotide binding

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.43 55.3 At2g27790 817326 nucleic acid binding / nucleotide binding F:nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPOF S.X. H.G.
0.57 73.8 At4g29530 829074 2,3-diketo-5-methylthio-1-phosphopentane phosphatase family F:phosphatase activity, catalytic activity;P:metabolic process;C:cellular_component unknown;MPOBF S.X. H.G.
0.40 50.8 At1g73150 843646 GTE3 (GLOBAL TRANSCRIPTION FACTOR GROUP E 3) Bromodomain and extra terminal domain family protein. Binds to acetyl-histone H3. Binding is reduced when GTE3 is SUMOylated by SIZ1. S.X. H.G.
0.20 14.4 At4g00420 828061 double-stranded RNA-binding domain (DsRBD)-containing protein F:double-stranded RNA binding, RNA binding;P:biological_process unknown;C:intracellular, chloroplast;P S.X. H.G.
0.07 1.9 At5g65560 836682 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
424.2 100.0 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
152.6 99.9 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
135.0 99.9 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
129.5 99.9 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
124.6 99.9 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
122.2 99.9 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
117.7 99.9 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
117.4 99.9 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
106.3 99.9 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
105.1 99.9 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.27 7e-98 357 At5g27300 832788 - F:molecular_function unknown;P:biological_process unknown;C:unknown;POMFA C.G. S.X.
0.02 4e-1 36 At5g04890 830370 RTM2 (RESTRICTED TEV MOVEMENT 2) Specifically restricts the long-distance movement of tobacco etch potyvirus (TEV) without involving either hypersensitive cell death or systemic acquired resistance. Multidomain protein containing an N-terminal region with high similarity to plant small heat shock proteins (HSPs). C.G. S.X.
0.03 4e-1 36 At3g19900 821528 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OBPF C.G. S.X.
0.02 4e-1 36 At3g27320 822351 hydrolase F:hydrolase activity;P:metabolic process;C:unknown;BOPFMAV C.G. S.X.
0.03 1e+0 34 At4g25600 828665 ShTK domain-containing protein F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, iron ion binding;P:protein metabolic process;C:unknown;MPBOV C.G. S.X.
0.02 1e+0 34 At1g69540 843289 AGL94 (AGAMOUS-LIKE 94) Encodes a member of the MIKC (MADS box, Keratin binding domain, and C terminal domain containing )family of transcriptional regulators. C.G. S.X.
0.04 1e+0 34 At1g66100 842924 thionin, putative Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660. C.G. S.X.
0.01 6e+0 32 At5g60960 836217 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFM C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e+0 34 Glycine max GmaAffx.22785.1.S1_at BG653504 - - 1e-2 At3g56910 PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5) C.G. S.X.
0.04 2e-1 36 Hordeum vulgare EBem09_SQ002_L08_x_at EBem09_SQ002_L08 - - 1e-1 At2g27790 nucleic acid binding / nucleotide binding C.G. S.X.
0.03 4e-2 40 Oryza sativa Os02g0105000 AK060064.1 - RNA-binding region RNP-1 (RNA recognition motif)domain containing protein 4e-2 At2g27790 nucleic acid binding / nucleotide binding C.G. S.X.
0.25 6e-16 85 Populus trichocarpa PtpAffx.204374.1.S1_at pmrna8595 hypothetical protein - 4e-16 At2g27790 nucleic acid binding / nucleotide binding C.G. S.X.
0.03 6e+0 32 Triticum aestivum TaAffx.53695.1.S1_at CA689939 - - 4e+0 At2g27790 nucleic acid binding / nucleotide binding C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1616122_at CF211952 hypothetical protein LOC100260149 - 2e+0 At5g03780 TRFL10 (TRF-LIKE 10) C.G. S.X.
0.03 2e+0 32 Zea mays Zm.13295.1.A1_at CO531194 - - 2e+0 At2g19880 ceramide glucosyltransferase, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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