CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g27550

Gene name ATC (ARABIDOPSIS THALIANA CENTRORADIALIS)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.46 59.8 At2g27550 817302 ATC (ARABIDOPSIS THALIANA CENTRORADIALIS) encodes a protein similar to TFL1. overexpression leads to similar phenotype as TFL1 overexpression. expressed specifically in the hypocotyl and null mutation does not result in phenotypes exhibited by TFL1 null mutations. S.X. H.G.
0.57 73.8 At5g13900 831237 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:anchored to membrane;P S.X. H.G.
0.53 68.6 At1g03700 839428 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.53 68.6 At1g54540 841896 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.50 65.3 At5g19410 832061 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:chloroplast, membrane;BOMFAPV S.X. H.G.
0.41 52.4 At1g56320 842085 unknown protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P S.X. H.G.
0.27 26.2 At5g50560 835124 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.25 22.6 At4g13235 826940 EDA21 (embryo sac development arrest 21) Encodes a defensin-like (DEFL) family protein. S.X. H.G.
0.16 8.8 At5g49350 3771473 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBOPFVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
380.9 100.0 GSM226554 Slice12JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
202.7 100.0 GSM184906 Arabidopsis, root cells, protophloem, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
159.5 99.9 GSM184904 Arabidopsis, root cells, protophloem, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
150.2 99.9 GSM184846 Arabidopsis, root, longitudinal zone 4, standard conditions, NaCl, replicate 2 GSE7639 Expression analysis of root developmental zones after treatment with salt
124.2 99.9 GSM226541 L11SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
109.9 99.9 GSM184934 Arabidopsis, whole roots, 140 mM NaCl, 16 hour, replicate 2 GSE7642 Time course expression analysis of the salt stress response in Arabidopsis roots
107.0 99.9 GSM184932 Arabidopsis, whole roots, 140 mM NaCl, 4 hour, replicate 2 GSE7642 Time course expression analysis of the salt stress response in Arabidopsis roots
106.5 99.9 GSM184922 Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
100.2 99.9 GSM184634 Arabidopsis, root cells, 140 mM NaCl, replicate 1 GSE7636 Expression analysis of the effect of protoplasting and FACS sorting in roots
98.8 99.9 GSM184845 Arabidopsis, root, longitudinal zone 4, standard conditions, NaCl, replicate 1 GSE7639 Expression analysis of root developmental zones after treatment with salt
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.25 2e-8 59 At5g03840 831683 TFL1 (TERMINAL FLOWER 1) Controls inflorescence meristem identity. Involved in the floral initiation process. Ortholog of the Antirrhinum gene CENTRORADIALIS (CEN). Involved in protein trafficking to the protein storage vacuole. C.G. S.X.
0.06 3e-1 36 At4g29300 829052 LCR27 (Low-molecular-weight cysteine-rich 27) Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family. C.G. S.X.
0.02 1e+0 34 At5g05000 830382 TOC34 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 34) Outer membrane protein that may function in import of nuclear encoded proteins into the chloroplast. C.G. S.X.
0.02 1e+0 34 At5g22830 832346 ATMGT10 (MAGNESIUM (MG) TRANSPORTER 10) putative Mg(2+) transport protein C.G. S.X.
0.01 1e+0 34 At4g08180 826368 ORP1C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1C) F:phosphoinositide binding, oxysterol binding;P:steroid metabolic process, signal transduction;C:cellular_component unknown;MFOPB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 9e-2 38 Glycine max Gma.6921.1.S1_at BE823209 - - 4e-4 At1g18100 E12A11 C.G. S.X.
0.12 2e-12 71 Hordeum vulgare Contig15332_at Contig15332 - - 6e-12 At2g27550 ATC (ARABIDOPSIS THALIANA CENTRORADIALIS) C.G. S.X.
0.13 2e-16 87 Oryza sativa Os11g0152500 AF159882.1 - Phosphatidylethanolamine-binding protein familyprotein 1e-16 At2g27550 ATC (ARABIDOPSIS THALIANA CENTRORADIALIS) C.G. S.X.
0.36 3e-20 99 Populus trichocarpa PtpAffx.35119.1.S1_at AB181239.1 hypothetical protein - 2e-20 At2g27550 ATC (ARABIDOPSIS THALIANA CENTRORADIALIS) C.G. S.X.
0.24 5e-12 71 Triticum aestivum TaAffx.36760.1.S1_at BJ315664 - - 5e-12 At2g27550 ATC (ARABIDOPSIS THALIANA CENTRORADIALIS) C.G. S.X.
0.23 6e-15 79 Vitis vinifera 1619117_s_at BQ106731 TFL1A protein - 2e-14 At2g27550 ATC (ARABIDOPSIS THALIANA CENTRORADIALIS) C.G. S.X.
0.06 7e-3 40 Zea mays Zm.3034.1.A1_at AW134469 ZCN15 protein - 2e-2 At2g27550 ATC (ARABIDOPSIS THALIANA CENTRORADIALIS) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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