CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g27420

Gene name cysteine proteinase, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.30 32.1 At2g27420 817287 cysteine proteinase, putative F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:endomembrane system;MOPBVAF S.X. H.G.
0.17 10.2 At1g01520 839337 myb family transcription factor F:transcription factor activity, DNA binding;P:response to salt stress, regulation of transcription, DNA-dependent;C:unknown;POM S.X. H.G.
0.17 10.2 At1g02820 839304 late embryogenesis abundant 3 family protein / LEA3 family protein F:molecular_function unknown;P:embryonic development, response to stress;C:unknown;P S.X. H.G.
0.15 7.8 At2g15020 815991 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.14 6.8 At3g21890 821744 zinc finger (B-box type) family protein F:transcription factor activity, zinc ion binding;P:response to UV-B, regulation of transcription;C:intracellular;PO S.X. H.G.
0.06 1.4 At5g58770 835991 dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putative F:dehydrodolichyl diphosphate synthase activity;P:dolichol biosynthetic process;C:chloroplast;OBAFMP S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
295.5 100.0 GSM133825 Walters_A-04-Kruger-WH1_REP1 GSE5737 Carbohydrate- and redox-regulation of gene expression in a TPT mutant
251.6 100.0 GSM133827 Walters_A-06-Kruger-WH3_REP3 GSE5737 Carbohydrate- and redox-regulation of gene expression in a TPT mutant
220.0 100.0 GSM133826 Walters_A-05-Kruger-WH2_REP2 GSE5737 Carbohydrate- and redox-regulation of gene expression in a TPT mutant
123.3 99.9 GSM133823 Walters_A-02-Kruger-WL2_REP2 GSE5737 Carbohydrate- and redox-regulation of gene expression in a TPT mutant
120.6 99.9 E-ATMX-19-raw-cel-1375547394
118.2 99.9 GSM133824 Walters_A-03-Kruger-WL3_REP3 GSE5737 Carbohydrate- and redox-regulation of gene expression in a TPT mutant
110.3 99.9 GSM133822 Walters_A-01-Kruger-WL1_REP1 GSE5737 Carbohydrate- and redox-regulation of gene expression in a TPT mutant
85.5 99.9 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
74.9 99.9 GSM297392 At.StarchSD.WTSS3.WTR1L1 GSE11708 Global gene expression in Atss3 mutant and WT over short day diurnal cycle
72.4 99.9 E-MEXP-1344-raw-cel-1559561683
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.59 1e-54 214 At3g49340 824096 cysteine proteinase, putative F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:unknown;MOPVBAF C.G. S.X.
0.18 2e-9 63 At2g34080 817969 cysteine proteinase, putative F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:endomembrane system;MOPVBAF C.G. S.X.
0.07 2e-9 63 At1g29110 839786 cysteine proteinase, putative F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPVBAF C.G. S.X.
0.06 1e-4 48 At1g29090 839784 peptidase C1A papain family protein F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPVBAF C.G. S.X.
0.03 8e-3 42 At1g29080 839783 peptidase C1A papain family protein F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPVBAF C.G. S.X.
0.04 3e-2 40 At3g48350 823993 cysteine proteinase, putative F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPVBAF C.G. S.X.
0.04 3e-2 40 At1g20850 838677 XCP2 (xylem cysteine peptidase 2) F:peptidase activity, cysteine-type peptidase activity;P:proteolysis, developmental programmed cell death;C:cell wall;MOPVBAF C.G. S.X.
0.02 5e-1 36 At1g60550 842350 ECHID (ENOYL-COA HYDRATASE/ISOMERASE D) F:naphthoate synthase activity, catalytic activity;P:vitamin K biosynthetic process, metabolic process, menaquinone biosynthetic process;C:peroxisome;BOMFPA C.G. S.X.
0.03 5e-1 36 At1g54050 841843 17.4 kDa class III heat shock protein (HSP17.4-CIII) F:molecular_function unknown;P:response to high light intensity, response to hydrogen peroxide, response to heat;C:unknown;BPOFAM C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e+0 34 Glycine max GmaAffx.880.1.S1_at BF596615 - - 5e-2 At3g18960 transcriptional factor B3 family protein C.G. S.X.
0.03 2e-2 40 Hordeum vulgare Contig3900_at Contig3900 - - 5e-2 At2g27420 cysteine proteinase, putative C.G. S.X.
0.04 4e+0 34 Oryza sativa Os05g0463200 9633.m03603 - - 1e+0 At2g27420 cysteine proteinase, putative C.G. S.X.
0.05 3e+0 34 Populus trichocarpa PtpAffx.72551.1.S1_at CV231269 hypothetical protein - 1e-20 At5g50260 cysteine proteinase, putative C.G. S.X.
0.03 6e-4 46 Triticum aestivum TaAffx.81638.1.S1_at BE217029 - - 5e-4 At3g49340 cysteine proteinase, putative C.G. S.X.
0.04 2e+0 32 Vitis vinifera 1620844_at CB978855 hypothetical protein LOC100264473 - 3e-14 At5g50260 cysteine proteinase, putative C.G. S.X.
0.02 6e-2 38 Zea mays Zm.7736.1.S1_at AF019146.1 maize insect resistance2 - 4e-3 At2g34080 cysteine proteinase, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006508 The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with the hydrolysis of peptide bonds.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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