Gene omics information

Query gene ID At2g27380
Gene name ATEPR1
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At2g27380817282ATEPR1Encodes an extensin like gene involved in seed germination.S.X.H.G.
0.9195.6At4g28520828970CRU3 (CRUCIFERIN 3)Encodes a 12S seed storage protein that is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.S.X.H.G.
0.8994.6At5g54740835563protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding, nutrient reservoir activity;P:lipid transport, pollen development;C:endomembrane system;POS.X.H.G.
0.8793.5At5g44120834435CRA1 (CRUCIFERINA)Encodes a 12S seed storage protein. The Landsberg erecta genome contains another copy of 12S globulin gene, CRA2, which is located tandemly with CRA1. Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.S.X.H.G.
0.8693.1At4g27160828824AT2S3F:lipid binding, nutrient reservoir activity;P:lipid transport;C:endomembrane system;POS.X.H.G.
0.8693.1At5g40420834040OLEO2 (OLEOSIN 2)Encodes oleosin2, a protein found in oil bodies, involved in seed lipid accumulation. Suppression of OLEO1 (and OLEO2) resulted in an aberrant phenotype of embryo cells that contain unusually large oilbodies that are not normally observed in seeds. Changes in the size of oilbodies caused disruption of storage organelles, altering accumulation of lipids and proteins and causing delay in germination. Functions in freezing tolerance of seeds.S.X.H.G.
0.8391.4At3g27660822388OLEO4 (OLEOSIN 4)Encodes oleosin4 (Plant Cell, 2006, 18:1961), a protein found in oil bodies, involved in seed lipid accumulation. Functions in freezing tolerance of seeds. Note: also referred to as OLE3 in Plant Journal 2008, 55:798.S.X.H.G.
0.8290.9At3g22640821835PAP85F:nutrient reservoir activity;P:biological_process unknown;C:plant-type cell wall;POMS.X.H.G.
0.8190.4At1g03880839383CRU2 (CRUCIFERIN 2)Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.S.X.H.G.
0.8190.4At4g25140828617OLEO1 (OLEOSIN 1)Encodes oleosin1, a protein found in oil bodies, involved in seed lipid accumulation. Suppression of OLEO1 (and OLEO2) resulted in an aberrant phenotype of embryo cells that contain unusually large oilbodies that are not normally observed in seeds. Changes in the size of oilbodies caused disruption of storage organelles, altering accumulation of lipids and proteins and causing delay in germination. Functions in freezing tolerance of seeds.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
307.7100.0GSM10481lec1-1 Mature Green Seed 1GSE1051Seed development in LEAFY COTYLEDON1 mutants
256.7100.0GSM10483lec1-1 Post-Mature Green Seed 1GSE1051Seed development in LEAFY COTYLEDON1 mutants
234.0100.0GSM10454WT Post-Mature Green Seed 1GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
228.2100.0GSM10456WT Post-Mature Green Seed 2GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
143.299.9GSM131707ATGE_84_BGSE5634AtGenExpress: Developmental series (siliques and seeds)
137.299.9GSM10482lec1-1 Mature Green Seed 2GSE1051Seed development in LEAFY COTYLEDON1 mutants
137.199.9GSM131704ATGE_83_BGSE5634AtGenExpress: Developmental series (siliques and seeds)
130.599.9GSM134307Penfield_1-9_endosperm-PAC_Rep3_ATH1GSE5751The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
128.999.9GSM131705ATGE_83_CGSE5634AtGenExpress: Developmental series (siliques and seeds)
128.799.9GSM131703ATGE_83_AGSE5634AtGenExpress: Developmental series (siliques and seeds)
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.011e+036At4g08500826409MEKK1 (MAP KINASE KINASE KINASE 1)Member of MAP Kinase Kinase gene family. Mediates cold, salt, cadmium and wounding stress signalling. Phosphorylates AtMEK1.C.G.S.X.
0.015e+034At5g64440836565AtFAAH (Arabidopsis thaliana fatty acid amide hydrolase)AtFAAH (fatty acid amide hydrolase) modulates endogenous NAEs (N-Acylethanolamines) levels in plants by hydrolyzing NAEs to ethanolamine and their corresponding free fatty acids. NAE depletion likely participates in the regulation of plant growth.C.G.S.X.
0.015e+034At5g47240834771atnudt8 (Arabidopsis thaliana Nudix hydrolase homolog 8)F:hydrolase activity;P:response to wounding;C:cytosol;BOMPAFVC.G.S.X.
0.015e+034At4g14385827083-F:molecular_function unknown;P:biological_process unknown;C:vacuole;MFOPC.G.S.X.
0.015e+034At4g12510826863protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PC.G.S.X.
0.015e+034At4g12520826864protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PC.G.S.X.
0.015e+034At4g15160827182lipid binding / structural constituent of cell wallF:lipid binding, structural constituent of cell wall;P:lipid transport;C:endomembrane system;MBOPFVAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.012e+036Glycine maxHgAffx.12445.1.S1_atCB375537--4e+0At5g41920scarecrow transcription factor family proteinC.G.S.X.
0.016e-136Hordeum vulgareContig3285_atContig3285--4e-1At2g40240pentatricopeptide (PPR) repeat-containing proteinC.G.S.X.
0.029e-344Oryza sativaOsAffx.30789.1.S1_at---0C.G.S.X.
0.024e-138Populus trichocarpaPtpAffx.653.1.S1_a_atCV227680--7e-2At4g08370proline-rich extensin-like family proteinC.G.S.X.
0.018e-240Triticum aestivumTa.2335.2.A1_atCA722075--2e-5At3g55010PUR5C.G.S.X.
0.024e-446Vitis vinifera1621384_atAY046417.1proline rich protein 2-2e+0Atmg01250-C.G.S.X.
0.012e+034Zea maysZm.4628.1.A1_atAW066875hypothetical protein LOC100272450-2e-2At4g33400dem protein-related / defective embryo and meristems protein-relatedC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
SGO:0009827The series of events leading to chemical and structural alterations of an existing cellulose and pectin-containing cell wall that can result in loosening, increased extensibility or disassembly. An example of this is found in Arabidopsis thaliana.
SGO:0009845The physiological and developmental changes that occur in a seed commencing with water uptake (imbibition) and terminating with the elongation of the embryonic axis.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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