CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g27320

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.57 73.8 At2g27320 817275 unknown protein F:unknown;P:biological_process unknown;C:endomembrane system;PFB S.X. H.G.
1.00 100.0 At4g38530 830010 ATPLC1 (ARABIDOPSIS THALIANA PHOSPHOLIPASE C 1) Encodes a putative phosphoinositide-specific phospholipase C. There are two genes called ATPLC1, one corresponding to AT4g38530 (this one) and one corresponding to AT5g58670. S.X. H.G.
0.80 89.8 At5g38310 833813 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MP S.X. H.G.
0.75 86.9 At2g21910 816727 CYP96A5 member of CYP96A S.X. H.G.
0.29 30.3 At1g72950 843626 disease resistance protein (TIR-NBS class), putative F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PBM S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
585.3 100.0 E-MEXP-807-raw-cel-1173273116
493.6 100.0 E-MEXP-807-raw-cel-1173273088
411.2 100.0 E-MEXP-807-raw-cel-1173273252
280.7 100.0 E-MEXP-807-raw-cel-1173273144
264.8 100.0 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
195.3 100.0 E-MEXP-807-raw-cel-1173273223
174.5 100.0 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
170.7 100.0 E-MEXP-807-raw-cel-1173273196
152.4 99.9 E-MEXP-807-raw-cel-1173273060
142.2 99.9 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.59 4e-57 222 At2g38255 818405 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFB C.G. S.X.
0.41 2e-34 147 At2g35250 818092 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFB C.G. S.X.
0.01 5e-1 36 At4g23370 828436 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFB C.G. S.X.
0.02 2e+0 34 At5g40250 834023 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV C.G. S.X.
0.02 2e+0 34 At4g38230 829980 CPK26 member of Calcium Dependent Protein Kinase C.G. S.X.
0.01 2e+0 34 At4g38890 830044 dihydrouridine synthase family protein F:tRNA dihydrouridine synthase activity, FAD binding, catalytic activity;P:oxidation reduction, tRNA processing, metabolic process;C:vacuole;BOMFPA C.G. S.X.
0.01 2e+0 34 At4g13920 827026 AtRLP50 (Receptor Like Protein 50) F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAV C.G. S.X.
0.01 2e+0 34 At4g13810 827015 AtRLP47 (Receptor Like Protein 47) F:protein binding;P:signal transduction, defense response;C:unknown;PMOBFAV C.G. S.X.
0.02 2e+0 34 At4g15053 827167 unknown protein F:unknown;P:biological_process unknown;C:endomembrane system;PFBO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e+0 34 Glycine max GmaAffx.43119.1.A1_at CD392171 - - 1e+1 At5g28642 unknown protein C.G. S.X.
0.03 4e+0 32 Hordeum vulgare Contig25509_at Contig25509 - - 7e-2 At5g25240 - C.G. S.X.
0.05 6e-5 50 Oryza sativa OsAffx.24880.1.S1_at - - - 0 C.G. S.X.
0.03 4e-2 40 Populus trichocarpa PtpAffx.201375.1.S1_s_at pmrna2713 hypothetical protein - 6e-1 At5g52150 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.03 8e-3 42 Triticum aestivum TaAffx.58096.1.S1_at CA622454 - - 4e-3 At2g27320 unknown protein C.G. S.X.
0.03 6e-1 34 Vitis vinifera 1608168_at CB345156 - - 1e+1 At2g18300 basic helix-loop-helix (bHLH) family protein C.G. S.X.
0.02 8e-1 34 Zea mays Zm.11120.1.A1_at BM337897 hypothetical protein LOC100273183 - 2e-2 At3g13850 LBD22 (LOB DOMAIN-CONTAINING PROTEIN 22) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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