CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g27310

Gene name F-box family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.80 89.8 At2g27310 817274 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
1.00 100.0 At5g52050 835280 MATE efflux protein-related F:drug transporter activity, antiporter activity;P:multidrug transport;C:membrane;BOPFAM S.X. H.G.
0.67 81.6 At5g42380 834244 CML37 (CALMODULIN LIKE 37) F:calcium ion binding;P:response to ozone;C:chloroplast;MPOFBV S.X. H.G.
0.61 76.7 At2g22760 816806 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFOMA S.X. H.G.
0.60 75.7 At2g32140 817773 transmembrane receptor F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane, chloroplast;PBO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
536.2 100.0 E-MEXP-807-raw-cel-1173273252
483.9 100.0 E-MEXP-807-raw-cel-1173273144
336.1 100.0 E-MEXP-807-raw-cel-1173273116
276.1 100.0 E-MEXP-807-raw-cel-1173273170
217.9 100.0 E-MEXP-807-raw-cel-1173273060
205.9 100.0 E-MEXP-807-raw-cel-1173273088
160.2 99.9 E-MEXP-807-raw-cel-1173273196
155.6 99.9 E-MEXP-807-raw-cel-1173273223
137.8 99.9 GSM13784 Cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
126.1 99.9 E-MEXP-1443-raw-cel-1581869921
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 8e-3 42 At5g25110 832582 CIPK25 (CBL-INTERACTING PROTEIN KINASE 25) member of AtCIPKs C.G. S.X.
0.03 8e-3 42 At2g36090 818182 F-box family protein F:unknown;P:biological_process unknown;C:unknown;P C.G. S.X.
0.02 3e-2 40 At5g08400 830738 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;OBP C.G. S.X.
0.03 3e-2 40 At3g44326 3769632 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P C.G. S.X.
0.03 5e-1 36 At5g55620 835656 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 5e-1 36 At5g57160 835822 ATLIG4 Encodes the Arabidopsis orthologue of the yeast and mammalian DNA ligase IV. Involved in the repair of DNA damage but, unlike in yeast, not required for T-DNA integration. Interacts with the Arabidopsis homologue of XRCC4. C.G. S.X.
0.02 5e-1 36 At4g24220 828523 VEP1 (VEIN PATTERNING 1) encodes a novel protein containing mammalian death domain involved in programmed cell death. Gene is expressed in vascular system and mutants carrying dominant mutation in the gene have defective vascular patterning. Gene expression is induced specifically by wounding. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 7e-1 36 Glycine max HgAffx.16511.1.S1_at CB279845 - - 3e-1 At2g27310 F-box family protein C.G. S.X.
0.02 1e+0 34 Hordeum vulgare Contig16574_at Contig16574 - - 1e+0 At1g26940 peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein C.G. S.X.
0.03 1e+0 36 Oryza sativa Os05g0116900 9633.m00179 - - 2e-1 At2g27310 F-box family protein C.G. S.X.
0.04 1e-2 42 Populus trichocarpa PtpAffx.210304.1.S1_x_at pmrna20270 hypothetical protein - 4e-1 At4g13150 unknown protein C.G. S.X.
0.03 2e+0 34 Triticum aestivum TaAffx.121599.1.S1_s_at BQ606120 - - 7e-2 At3g50550 unknown protein C.G. S.X.
0.03 9e+0 30 Vitis vinifera 1622465_s_at BQ797465 hypothetical protein LOC100263186 - 3e-14 At3g16570 RALFL23 (ralf-like 23) C.G. S.X.
0.02 3e+0 32 Zea mays ZmAffx.831.1.A1_at AI770541 Hypothetical protein LOC100191667 - 2e-1 At1g21900 emp24/gp25L/p24 family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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