Gene omics information

Query gene ID At2g27310
Gene name F-box family protein
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.8089.8At2g27310817274F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
1.00100.0At5g52050835280MATE efflux protein-relatedF:drug transporter activity, antiporter activity;P:multidrug transport;C:membrane;BOPFAMS.X.H.G.
0.6781.6At5g42380834244CML37 (CALMODULIN LIKE 37)F:calcium ion binding;P:response to ozone;C:chloroplast;MPOFBVS.X.H.G.
0.6176.7At2g22760816806basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFOMAS.X.H.G.
0.6075.7At2g32140817773transmembrane receptorF:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane, chloroplast;PBOS.X.H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
137.899.9GSM13784Cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transition
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.028e-342At5g25110832582CIPK25 (CBL-INTERACTING PROTEIN KINASE 25)member of AtCIPKsC.G.S.X.
0.038e-342At2g36090818182F-box family proteinF:unknown;P:biological_process unknown;C:unknown;PC.G.S.X.
0.023e-240At5g08400830738unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;OBPC.G.S.X.
0.033e-240At3g443263769632-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PC.G.S.X.
0.035e-136At5g55620835656unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.015e-136At5g57160835822ATLIG4Encodes the Arabidopsis orthologue of the yeast and mammalian DNA ligase IV. Involved in the repair of DNA damage but, unlike in yeast, not required for T-DNA integration. Interacts with the Arabidopsis homologue of XRCC4.C.G.S.X.
0.025e-136At4g24220828523VEP1 (VEIN PATTERNING 1)encodes a novel protein containing mammalian death domain involved in programmed cell death. Gene is expressed in vascular system and mutants carrying dominant mutation in the gene have defective vascular patterning. Gene expression is induced specifically by wounding.C.G.S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.037e-136Glycine maxHgAffx.16511.1.S1_atCB279845--3e-1At2g27310F-box family proteinC.G.S.X.
0.021e+034Hordeum vulgareContig16574_atContig16574--1e+0At1g26940peptidyl-prolyl cis-trans isomerase cyclophilin-type family proteinC.G.S.X.
0.031e+036Oryza sativaOs05g01169009633.m00179--2e-1At2g27310F-box family proteinC.G.S.X.
0.041e-242Populus trichocarpaPtpAffx.210304.1.S1_x_atpmrna20270hypothetical protein-4e-1At4g13150unknown proteinC.G.S.X.
0.032e+034Triticum aestivumTaAffx.121599.1.S1_s_atBQ606120--7e-2At3g50550unknown proteinC.G.S.X.
0.039e+030Vitis vinifera1622465_s_atBQ797465hypothetical protein LOC100263186-3e-14At3g16570RALFL23 (ralf-like 23)C.G.S.X.
0.023e+032Zea maysZmAffx.831.1.A1_atAI770541Hypothetical protein LOC100191667-2e-1At1g21900emp24/gp25L/p24 family proteinC.G.S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage