Gene omics information

Query gene ID At2g27285
Gene name unknown protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.3032.1At2g27285817271unknown proteinF:unknown;P:unknown;C:unknown;MOBFPAVS.X.H.G.
0.9195.6At4g33690829511unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOFPS.X.H.G.
0.7586.9At3g12480820427NF-YC11 (NUCLEAR FACTOR Y, SUBUNIT C11)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, intracellular;MPFOBS.X.H.G.
0.5773.8At5g08190830715NF-YB12 (NUCLEAR FACTOR Y, SUBUNIT B12)F:transcription factor activity, DNA binding;P:regulation of transcription;C:intracellular;MPFOS.X.H.G.
0.5673.0At1g17130838283cell cycle control protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVS.X.H.G.
0.4253.9At5g51410835215LUC7 N_terminus domain-containing proteinF:RNA binding;P:biological_process unknown;C:cellular_component unknown;MOFPBVAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
107.499.9GSM284394Arabidopsis GCE3GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
81.699.9GSM284392Arabidopsis GCE1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
66.999.8GSM284393Arabidopsis GCE2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
64.499.8GSM284388Arabidopsis GMPE1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
59.599.8GSM284389Arabidopsis GMPE2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
58.899.8GSM311292Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 2GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
54.299.8GSM311291Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 1GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
52.899.8GSM311281Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
51.299.8GSM311282Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
49.999.8GSM284396Arabidopsis GPSc2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.634e-171601At2g27280817270unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVAC.G.S.X.
0.463e-64246At1g559283767464unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVAC.G.S.X.
0.013e-240At5g66750836808CHR1 (CHROMATIN REMODELING 1)Protein is similar to SWI2/SNF2 chromatin remodeling proteins. DDM1 is appears to act as a chromatin-remodeling ATPase involved in cytosine methylation in CG and non-CG contexts. Involved in gene silencing and maintenance of DNA methylation and histone methylation. Hypomethylation of many genomic regions occurs in ddm1 mutants, and can cause several phenotypic abnormalities, but some loci, such as BONSAI (At1g73177) can be hypermethylated in ddm1 mutants after several generations, leading to different phenotypes. DDM1 might be involved in establishing a heterochromain boundary. A line expressing an RNAi targeted against DDM1 shows some resistance to agrobacterium-mediated root transformation.C.G.S.X.
0.023e-240At3g23930821976unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;MOFBPVAC.G.S.X.
0.021e-138At5g66055836737AKRP (ANKYRIN REPEAT PROTEIN)F:protein binding;P:embryonic development ending in seed dormancy;C:chloroplast;MOBFPVAC.G.S.X.
0.021e-138At5g52550835332unknown proteinF:unknown;P:unknown;C:unknown;MOBFPAVC.G.S.X.
0.011e-138At1g62740842572stress-inducible protein, putativeF:binding;P:response to stress;C:cytosol, nucleus, plasma membrane;OBMPFAVC.G.S.X.
0.015e-136Atcg01280--hypothetical proteinC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.042e-448Glycine maxGmaAffx.84965.1.S1_atBU550358--8e-5At2g27285unknown proteinC.G.S.X.
0.042e-550Hordeum vulgareContig2846_atContig2846--3e-5At2g27285unknown proteinC.G.S.X.
0.037e-859Oryza sativaOs04g0440000AK101691.1-Conserved hypothetical protein3e-6At1g55928unknown proteinC.G.S.X.
0.178e-1065Populus trichocarpaPtp.7680.1.S1_a_atDN498857hypothetical protein-7e-10At2g27285unknown proteinC.G.S.X.
0.072e-654Triticum aestivumTa.8098.1.S1_x_atCA634046--3e-6At2g27285unknown proteinC.G.S.X.
0.133e-1271Vitis vinifera1608424_atCB007996hypothetical protein LOC100241506-1e-11At2g27285unknown proteinC.G.S.X.
0.022e-136Zea maysZm.5879.1.S1_atCF628626hypothetical protein LOC100277595-5e+0At5g23220NIC3 (NICOTINAMIDASE 3)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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