CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g27120

Gene name TIL2 (TILTED 2)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At2g27120 817254 TIL2 (TILTED 2) Encodes a protein with similarity to DNA polymerase epsilon catalytic subunit. Based on yeast two hybrid analysis, not predicted to be a subunit of the DNA polymerase epsilon complex. No phenotype observed in homozygous mutant embryos or plants but in combination with TIL1-1/til1-1 heterozygotes arrest earlier than til1 homozygotes suggesting TIL2 functions redundantly with TIL1. S.X. H.G.
0.97 97.6 At5g60250 836147 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding, nucleic acid binding;P:unknown;C:unknown;MFPOB S.X. H.G.
0.95 97.0 At2g44190 819026 EDE1 (ENDOSPERM DEFECTIVE 1) Encodes a novel microtubule binding protein that preferentially associates with nuclear microtubules during mitosis and is essential during the mitotic and cytokinetic stages that generate the endosperm and embryo. S.X. H.G.
0.95 97.0 At4g35560 829708 - F:molecular_function unknown;P:unknown;C:CUL4 RING ubiquitin ligase complex;MOFPB S.X. H.G.
0.95 97.0 At2g22600 816791 KH domain-containing protein F:RNA binding, nucleic acid binding;P:biological_process unknown;C:unknown;MPFO S.X. H.G.
0.95 97.0 At1g08600 837382 ATRX F:helicase activity, DNA binding, nucleic acid binding, ATP binding;P:unknown;C:unknown;MOBFPVA S.X. H.G.
0.95 97.0 At1g23210 838930 AtGH9B6 (Arabidopsis thaliana glycosyl hydrolase 9B6) F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOF S.X. H.G.
0.95 97.0 At5g49150 834974 GEX2 (GAMETE EXPRESSED 2) Encodes a transmembrane domain containing protein expressed in sperm cells. S.X. H.G.
0.94 96.7 At4g00240 826673 PLDBETA2 member of C2-PLD subfamily S.X. H.G.
0.94 96.7 At4g08590 826420 ORTHL (ORTHRUS-LIKE) F:ubiquitin-protein ligase activity, zinc ion binding;P:protein ubiquitination;C:cytoplasm;MPOFBV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
501.6 100.0 E-ATMX-35-raw-cel-1574334816
442.6 100.0 E-ATMX-35-raw-cel-1574334832
391.5 100.0 E-ATMX-35-raw-cel-1574334800
215.9 100.0 E-ATMX-31-raw-cel-1516947916
212.5 100.0 E-MEXP-1797-raw-cel-1669768012
200.6 100.0 E-MEXP-1797-raw-cel-1669767976
156.7 99.9 E-MEXP-1797-raw-cel-1669767994
152.5 99.9 E-MEXP-1797-raw-cel-1669768075
152.4 99.9 E-MEXP-1797-raw-cel-1669768066
149.3 99.9 E-ATMX-31-raw-cel-1516947899
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.83 0 1731 At1g08260 837346 TIL1 (TILTED 1) Similar to POL2A, DNA polymerase epsilon catalytic subunit. Essential for Arabidopsis growth. Null homozygotes are embryo lethal, partial loss of function alleles show embryo patterning defects such as root pole displacement. Delayed progression through cell cycle results in embryos with smaller numbers of larger cells. C.G. S.X.
0.01 5e-2 42 At4g37780 829934 MYB87 (MYB DOMAIN PROTEIN 87) "encoded by the Myb-like transcription factor MYB87, regulates axillary meristem formation, expressed throughout the plant. Member of the R2R3 factor gene family." C.G. S.X.
0.01 2e-1 40 At2g21790 816715 RNR1 (RIBONUCLEOTIDE REDUCTASE 1) encodes large subunit of ribonucleotide reductase involved in the production of deoxyribonucleoside triphosphates (dNTPs) for DNA replication and repair C.G. S.X.
0.01 8e-1 38 At4g35770 829730 SEN1 (SENESCENCE 1) Senescence-associated gene that is strongly induced by phosphate starvation. Transcripts are differentially regulated at the level of mRNA stability at different times of day. mRNAs are targets of the mRNA degradation pathway mediated by the downstream (DST) instability determinant. C.G. S.X.
0.01 8e-1 38 At3g26210 822222 CYP71B23 putative cytochrome P450 C.G. S.X.
0.00 3e+0 36 At5g64300 836551 ATGCH encodes GTP cyclohydrolase II that can functionally complement E. coli mutant deficient in this gene. It also has 3,4-dihydroxy-2-butanone-4-phosphate synthase activity which makes it a bifunctional enzyme involved in the formation of the pyrimidine and of the carbohydrate from GTP and ribulose-5-phosphate, respectively C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e-7 59 Glycine max PsAffx.C96000029_at PsAffx.C96000029 - - 2e-7 At2g27120 TIL2 (TILTED 2) C.G. S.X.
0.01 2e+0 36 Hordeum vulgare HVSMEl0002F13r2_x_at HVSMEl0002F13r2 - - 3e-1 At3g12480 NF-YC11 (NUCLEAR FACTOR Y, SUBUNIT C11) C.G. S.X.
0.22 2e-73 280 Oryza sativa Os02g0511900 9630.m02953 - DNA-directed DNA polymerase B family protein 6e-88 At1g08260 TIL1 (TILTED 1) C.G. S.X.
0.01 1e+0 38 Populus trichocarpa PtpAffx.31292.1.S1_a_at DN486791 hypothetical protein - 6e-4 At1g08260 TIL1 (TILTED 1) C.G. S.X.
0.01 3e+0 36 Triticum aestivum Ta.8966.1.S1_at BQ162701 - - 5e+0 At4g21610 LOL2 (LSD ONE LIKE 2) C.G. S.X.
0.01 2e-1 38 Vitis vinifera 1619318_at BQ793250 hypothetical protein LOC100248394 - 5e+0 At5g65840 - C.G. S.X.
0.01 4e-1 38 Zea mays ZmAffx.476.1.A1_at AI677574 hypothetical protein LOC100272823 - 1e+1 Atcg00800 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006139 The chemical reactions and pathways involving nucleobases, nucleosides, nucleotides and nucleic acids.
L GO:0006260 The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00230 Purine metabolism
00240 Pyrimidine metabolism
01100 Metabolic pathways
03030 DNA replication
03410 Base excision repair
03420 Nucleotide excision repair
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