Gene omics information

Query gene ID At2g27100
Gene name SE (SERRATE)
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.3235.7At2g27100817252SE (SERRATE)Identified as a leaf form mutant by Redei having serrated leaves. Further analysis of the single loss of function allele indicated pleiotropic effects extending to many aspects of shoot development such as taller meristems, alterations in phase transition, phyllotaxy and branching. Encodes a single zinc finger containing protein that is expressed in meristems and organ primordia.S.X.H.G.
1.00100.0At3g54610824626GCN5Encodes a histone acetyltransferase that is plays a role in the determination of the embryonic root-shoot axis. It is also required to regulate the floral meristem activity by modulating the extent of expression of WUS and AG. In other eukaryotes, this protein is recruited to specific promoters by DNA binding transcription factors and is thought to promote transcription by acetylating the N-terminal tail of histone H3. The enzyme has indeed been shown to catalyse primarily the acetylation of H3 histone with only traces of H4 and H2A/B being acetylated. Non-acetylated H3 peptide or an H3 peptide that had been previously acetylated on K9 both serve as excellent substrates for HAG1-catalyzed acetylation. However, prior acetylation of H3 lysine 14 blocks radioactive acetylation of the peptide by HAG1. HAG1 is specific for histone H3 lysine 14.S.X.H.G.
0.8994.6At2g03780814905translin family proteinF:sequence-specific DNA binding, DNA binding;P:biological_process unknown;C:unknown;MFAOPS.X.H.G.
0.8693.1At5g25150832586TAF5 (TBP-ASSOCIATED FACTOR 5)Encodes a putative TATA-binding-protein associated factor TAF5. TAFs are subunits of the general transcription factor IID (TFIID).S.X.H.G.
0.6781.6At5g17690831635TFL2 (TERMINAL FLOWER 2)Regulates the meristem response to light signals and the maintenance of inflorescence meristem identity. Influences developmental processes controlled by APETALA1. TFL2 silences specific genes within euchromatin but not genes positioned in heterochromatin. TFL2 protein localized preferentially to euchromatic regions and not to heterochromatic chromocenters. Involved in euchromatin organization. Required for epigenetic maintenance of the vernalized state.S.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.021e-346At3g09770820135zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:N-terminal protein myristoylation;C:plasma membrane;MPOFVBAC.G.S.X.
0.027e-240At3g55790824745unknown proteinF:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;MPBOFVC.G.S.X.
0.013e-138At3g56940824861CRD1 (COPPER RESPONSE DEFECT 1)Encodes a putative ZIP protein with varying mRNA accumulation in leaves, stems and roots. Has a consensus carboxylate-bridged di-iron binding site.C.G.S.X.
0.013e-138At3g60870825258DNA-binding protein-relatedF:unknown;P:unknown;C:unknown;PBC.G.S.X.
0.013e-138At2g35860818159FLA16 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 PRECURSOR)F:unknown;P:cell adhesion;C:endomembrane system;BMPOFAVC.G.S.X.
0.011e+036At5g53730835454harpin-induced family protein / HIN1 family protein / harpin-responsive family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.011e+036At5g25590832634-F:unknown;P:N-terminal protein myristoylation;C:unknown;MOFPBVAC.G.S.X.
0.011e+036At5g17420831608IRX3 (IRREGULAR XYLEM 3)Encodes a xylem-specific cellulose synthase that is phosphorylated on one or more serine residues (on either S185 or one of S180 or S181).C.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.102e-21105Glycine maxGmaAffx.13991.1.A1_atBU547216--6e-22At2g27100SE (SERRATE)C.G.S.X.
0.111e-1791Hordeum vulgareContig9505_atContig9505--2e-17At2g27100SE (SERRATE)C.G.S.X.
0.136e-1067Oryza sativaOs.38989.1.S1_at---0C.G.S.X.
0.243e-57224Populus trichocarpaPtpAffx.204416.1.S1_atpmrna8683hypothetical protein-1e-57At2g27100SE (SERRATE)C.G.S.X.
0.063e-1067Triticum aestivumTa.1307.3.S1_atCA613138--5e-11At2g27100SE (SERRATE)C.G.S.X.
0.012e-240Vitis vinifera1616071_atCB978649hypothetical protein LOC100259260-5e-58At3g18480AtCASP (Arabidopsis thaliana CCAAT-displacement protein alternatively spliced product)C.G.S.X.
0.136e-1685Zea maysZm.15823.1.A1_atAI691486C2H2 zinc-finger protein-9e-16At2g27100SE (SERRATE)C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0008380The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA.
XGO:0031053Any process involved in the conversion of a primary microRNA transcript into a pre-microRNA molecule.
XGO:0010267Cleavage of double-stranded RNA to form trans-acting small interfering RNA molecules (siRNAs) of 21-23 nucleotides. ta-siRNAs arise from PolII genes and function like miRNAs to guide cleavage of target mRNAs.
XGO:0048367The process whose specific outcome is the progression of the shoot over time, from its formation to the mature structure.
SGO:0016568The alteration of DNA or protein in chromatin, which may result in changing the chromatin structure.
SGO:0045449Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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