CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g26790

Gene name pentatricopeptide (PPR) repeat-containing protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At2g26790 817220 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:mitochondrion;POMFBAV S.X. H.G.
0.72 84.8 At2g06140 815170 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.71 84.2 At2g44880 819097 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:endomembrane system;POFM S.X. H.G.
0.68 82.2 At5g26350 832704 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.60 75.7 At1g34904 3766926 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.59 74.7 At2g07737 3768151 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.58 73.8 At1g18310 838411 glycosyl hydrolase family 81 protein F:hydrolase activity, acting on glycosyl bonds, endo-1,3(4)-beta-glucanase activity;P:cell wall macromolecule catabolic process;C:unknown;FOBPM S.X. H.G.
0.58 73.8 At2g04310 3768003 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.56 73.0 At1g09410 837463 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:unknown;POMFB S.X. H.G.
0.53 68.6 At3g19070 821441 cell wall protein-related F:transcription factor activity;P:regulation of transcription;C:unknown;OMFPBVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
485.3 100.0 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
363.5 100.0 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
349.2 100.0 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
326.8 100.0 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
292.0 100.0 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
274.2 100.0 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
264.7 100.0 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
248.1 100.0 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
230.0 100.0 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
223.1 100.0 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.15 1e-19 99 At1g13800 837941 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;POMFBA C.G. S.X.
0.01 3e-1 38 At3g23750 821957 leucine-rich repeat family protein / protein kinase family protein F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA C.G. S.X.
0.01 3e-1 38 At3g24310 822019 MYB305 (myb domain protein 305) snapdragon myb protein 305 homolog (myb) C.G. S.X.
0.01 3e-1 38 At2g26390 817179 serpin, putative / serine protease inhibitor, putative F:serine-type endopeptidase inhibitor activity;P:biological_process unknown;C:cellular_component unknown;MVPBOAF C.G. S.X.
0.01 1e+0 36 At5g63200 836441 tetratricopeptide repeat (TPR)-containing protein F:binding;P:biological_process unknown;C:cellular_component unknown;OBMAFP C.G. S.X.
0.01 1e+0 36 At3g28780 822510 unknown protein F:molecular_function unknown;P:pollen exine formation;C:endomembrane system;BOMPFVA C.G. S.X.
0.01 5e+0 34 At5g05240 830406 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 2e+0 36 Glycine max Gma.5730.1.S1_at BM523055 - - 2e-1 At5g24400 emb2024 (embryo defective 2024) C.G. S.X.
0.02 2e+0 34 Hordeum vulgare Contig14030_at Contig14030 - - 8e-13 At1g76880 trihelix DNA-binding protein, putative C.G. S.X.
0.01 2e+0 36 Oryza sativa OsAffx.4311.1.S1_at - - - 0 C.G. S.X.
0.01 7e-3 44 Populus trichocarpa PtpAffx.201175.1.S1_at pmrna2327 hypothetical protein - 8e-57 At5g02860 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.01 5e+0 34 Triticum aestivum TaAffx.107556.1.S1_at CA698050 - - 4e+0 At5g54760 eukaryotic translation initiation factor SUI1, putative C.G. S.X.
0.01 4e-1 36 Vitis vinifera 1615854_at CF512129 hypothetical protein LOC100266517 - 3e-1 At5g23950 C2 domain-containing protein C.G. S.X.
0.01 2e+0 34 Zea mays Zm.10123.1.S1_at BM380717 heat- and acid-stable phosphoprotein - 3e-14 At5g46020 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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