CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g26460

Gene name RED family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At2g26460 817187 RED family protein F:molecular_function unknown;P:biological_process unknown;C:nucleus;MFOPVB S.X. H.G.
1.00 100.0 At1g55255 - - - S.X. H.G.
1.00 100.0 At3g07510 819939 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB S.X. H.G.
0.91 95.6 At2g47800 819392 ATMRP4 (ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 4) Encodes a plasma membrane localized ATPase transporter involved in multidrug transport. The expression of this gene is upregulated by herbicide safeners such as benoxacor, fluxofenim and fenclorim. S.X. H.G.
0.86 93.1 At1g17770 838355 SUVH7 (SU(VAR)3-9 HOMOLOG 7) Encodes a SU(VAR)3-9 homolog, a SET domain protein. Known SET domain proteins are involved in epigenetic control of gene expression and act as histone methyltransferases. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain. S.X. H.G.
0.86 93.1 At3g16620 820913 ATTOC120 component of TOC complex, plastid protein import machinery. S.X. H.G.
0.83 91.4 At1g77550 844091 protein binding / tubulin-tyrosine ligase F:protein binding, tubulin-tyrosine ligase activity;P:protein modification process;C:chloroplast;MOPFB S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3410.7 100.0 GSM133781 Lindsey_1-6_globular-basal_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
54.9 99.8 GSM311294 Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
31.9 99.7 GSM311282 Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
29.5 99.7 GSM311293 Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
29.0 99.7 GSM284396 Arabidopsis GPSc2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
28.0 99.7 GSM284395 Arabidopsis GPSc1 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
20.9 99.6 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
19.2 99.6 GSM311292 Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
18.7 99.5 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
15.8 99.5 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 6e-2 40 At1g49380 841361 cytochrome c biogenesis protein family F:molecular_function unknown;P:cytochrome complex assembly;C:chloroplast;BOPM C.G. S.X.
0.01 2e-1 38 At5g02910 831746 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO C.G. S.X.
0.02 2e-1 38 At3g06140 819787 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVBA C.G. S.X.
0.02 2e-1 38 At2g40470 818641 LBD15 (LOB DOMAIN-CONTAINING PROTEIN 15) F:unknown;P:biological_process unknown;C:cellular_component unknown;PM C.G. S.X.
0.00 2e-1 38 At1g72270 843559 unknown protein F:unknown;P:unknown;C:mitochondrion;MPFO C.G. S.X.
0.02 9e-1 36 At5g46620 834705 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 9e-1 36 At5g04810 830360 pentatricopeptide (PPR) repeat-containing protein F:nucleotide binding, nucleic acid binding;P:unknown;C:chloroplast;PMOFBVA C.G. S.X.
0.01 9e-1 36 At5g40610 834060 glycerol-3-phosphate dehydrogenase (NAD+) / GPDH F:in 9 functions;P:oxidation reduction, glycerol-3-phosphate metabolic process, glycerol-3-phosphate catabolic process, carbohydrate metabolic process, metabolic process;C:chloroplast, glycerol-3-phosphate dehydrogenase complex, cytoplasm;BOMFPA C.G. S.X.
0.01 9e-1 36 At4g27720 828886 - F:unknown;P:unknown;C:plasma membrane;BPMOFA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.28 8e-36 153 Glycine max Gma.5824.1.A1_at BE823678 - - 2e-36 At2g26460 RED family protein C.G. S.X.
0.19 1e-22 107 Hordeum vulgare Contig6784_at Contig6784 - - 4e-22 At2g26460 RED family protein C.G. S.X.
0.22 6e-25 117 Oryza sativa Os11g0146700 AK065900.1 - Conserved hypothetical protein 4e-25 At2g26460 RED family protein C.G. S.X.
0.38 3e-32 141 Populus trichocarpa PtpAffx.214026.1.S1_at pmrna27314 hypothetical protein - 3e-34 At2g26460 RED family protein C.G. S.X.
0.05 6e-8 59 Triticum aestivum Ta.8751.1.A1_at CK160792 - - 3e-8 At2g26460 RED family protein C.G. S.X.
0.26 1e-43 176 Vitis vinifera 1613730_at CB036143 hypothetical protein LOC100264670 - 2e-43 At2g26460 RED family protein C.G. S.X.
0.02 6e+0 32 Zea mays ZmAffx.477.1.A1_at AI677582 - - 8e-1 At5g51860 MADS-box protein (AGL72) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0008380 The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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