Gene omics information

Query gene ID At2g26460
Gene name RED family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At2g26460817187RED family proteinF:molecular_function unknown;P:biological_process unknown;C:nucleus;MFOPVBS.X.H.G.
1.00100.0At1g55255---S.X.H.G.
1.00100.0At3g07510819939unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBS.X.H.G.
0.9195.6At2g47800819392ATMRP4 (ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 4)Encodes a plasma membrane localized ATPase transporter involved in multidrug transport. The expression of this gene is upregulated by herbicide safeners such as benoxacor, fluxofenim and fenclorim.S.X.H.G.
0.8693.1At1g17770838355SUVH7 (SU(VAR)3-9 HOMOLOG 7)Encodes a SU(VAR)3-9 homolog, a SET domain protein. Known SET domain proteins are involved in epigenetic control of gene expression and act as histone methyltransferases. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain.S.X.H.G.
0.8693.1At3g16620820913ATTOC120component of TOC complex, plastid protein import machinery.S.X.H.G.
0.8391.4At1g77550844091protein binding / tubulin-tyrosine ligaseF:protein binding, tubulin-tyrosine ligase activity;P:protein modification process;C:chloroplast;MOPFBS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
3410.7100.0GSM133781Lindsey_1-6_globular-basal_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
54.999.8GSM311294Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 2GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
31.999.7GSM311282Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
29.599.7GSM311293Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 1GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
29.099.7GSM284396Arabidopsis GPSc2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
28.099.7GSM284395Arabidopsis GPSc1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
20.999.6GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
19.299.6GSM311292Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 2GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
18.799.5GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
15.899.5GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.016e-240At1g49380841361cytochrome c biogenesis protein familyF:molecular_function unknown;P:cytochrome complex assembly;C:chloroplast;BOPMC.G.S.X.
0.012e-138At5g02910831746F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOC.G.S.X.
0.022e-138At3g06140819787zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVBAC.G.S.X.
0.022e-138At2g40470818641LBD15 (LOB DOMAIN-CONTAINING PROTEIN 15)F:unknown;P:biological_process unknown;C:cellular_component unknown;PMC.G.S.X.
0.002e-138At1g72270843559unknown proteinF:unknown;P:unknown;C:mitochondrion;MPFOC.G.S.X.
0.029e-136At5g46620834705unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.019e-136At5g04810830360pentatricopeptide (PPR) repeat-containing proteinF:nucleotide binding, nucleic acid binding;P:unknown;C:chloroplast;PMOFBVAC.G.S.X.
0.019e-136At5g40610834060glycerol-3-phosphate dehydrogenase (NAD+) / GPDHF:in 9 functions;P:oxidation reduction, glycerol-3-phosphate metabolic process, glycerol-3-phosphate catabolic process, carbohydrate metabolic process, metabolic process;C:chloroplast, glycerol-3-phosphate dehydrogenase complex, cytoplasm;BOMFPAC.G.S.X.
0.019e-136At4g27720828886-F:unknown;P:unknown;C:plasma membrane;BPMOFAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.288e-36153Glycine maxGma.5824.1.A1_atBE823678--2e-36At2g26460RED family proteinC.G.S.X.
0.191e-22107Hordeum vulgareContig6784_atContig6784--4e-22At2g26460RED family proteinC.G.S.X.
0.226e-25117Oryza sativaOs11g0146700AK065900.1-Conserved hypothetical protein4e-25At2g26460RED family proteinC.G.S.X.
0.383e-32141Populus trichocarpaPtpAffx.214026.1.S1_atpmrna27314hypothetical protein-3e-34At2g26460RED family proteinC.G.S.X.
0.056e-859Triticum aestivumTa.8751.1.A1_atCK160792--3e-8At2g26460RED family proteinC.G.S.X.
0.261e-43176Vitis vinifera1613730_atCB036143hypothetical protein LOC100264670-2e-43At2g26460RED family proteinC.G.S.X.
0.026e+032Zea maysZmAffx.477.1.A1_atAI677582--8e-1At5g51860MADS-box protein (AGL72)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0008380The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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