CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g26450

Gene name pectinesterase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At2g26450 817185 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMO S.X. H.G.
0.96 97.3 At1g68110 843139 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related F:phospholipid binding, clathrin binding, binding, phosphatidylinositol binding;P:clathrin coat assembly;C:clathrin coat;PMFO S.X. H.G.
0.96 97.3 At3g20580 821605 COBL10 (COBRA-LIKE PROTEIN 10 PRECURSOR) F:unknown;P:biological_process unknown;C:anchored to membrane;P S.X. H.G.
0.96 97.3 At1g04540 839498 C2 domain-containing protein F:unknown;P:biological_process unknown;C:membrane;PMOFB S.X. H.G.
0.92 96.0 At2g31500 817708 CPK24 member of Calcium Dependent Protein Kinase S.X. H.G.
0.92 96.0 At3g17980 821323 C2 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFO S.X. H.G.
0.91 95.6 At3g05610 819727 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;OBPFMVA S.X. H.G.
0.91 95.6 At3g09530 820110 ATEXO70H3 (exocyst subunit EXO70 family protein H3) A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. S.X. H.G.
0.90 95.1 At2g18470 816362 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;MOPBFVA S.X. H.G.
0.89 94.6 At3g06260 819800 GATL4 (Galacturonosyltransferase-like 4) Encodes a protein with putative galacturonosyltransferase activity. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
160.3 99.9 GSM154508 Arabidopsis growing pollen tubes rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
156.8 99.9 E-MEXP-1138-raw-cel-1432772522
136.1 99.9 E-ATMX-35-raw-cel-1574334864
134.0 99.9 E-MEXP-1138-raw-cel-1432772586
132.2 99.9 GSM154506 Arabidopsis hydrated pollen grains rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
131.5 99.9 E-MEXP-1138-raw-cel-1432772970
128.9 99.9 E-MEXP-1138-raw-cel-1432772554
128.1 99.9 E-MEXP-1138-raw-cel-1432772778
127.2 99.9 E-MEXP-1138-raw-cel-1432772650
126.3 99.9 E-MEXP-1138-raw-cel-1432773034
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.56 7e-125 448 At4g33230 829459 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMO C.G. S.X.
0.03 4e-6 54 At1g23200 838928 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFAOM C.G. S.X.
0.02 1e-2 42 At2g47030 819317 VGDH1 F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO C.G. S.X.
0.02 6e-2 40 At4g02300 827708 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFM C.G. S.X.
0.02 6e-2 40 At3g47400 823894 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBOFVMA C.G. S.X.
0.01 6e-2 40 At2g14910 815980 unknown protein F:unknown;P:unknown;C:chloroplast;BOPM C.G. S.X.
0.01 2e-1 38 At2g36700 818242 pectinesterase family protein F:pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFM C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e-4 48 Glycine max GmaAffx.92477.1.S1_at CF808202 - - 4e-7 At2g47550 pectinesterase family protein C.G. S.X.
0.02 4e-1 36 Hordeum vulgare Contig5814_at Contig5814 - - 2e-2 At4g30330 small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putative C.G. S.X.
0.02 2e+0 36 Oryza sativa Os05g0361500 AK100947.1 - Pectinesterase family protein 2e-5 At1g02810 pectinesterase family protein C.G. S.X.
0.09 6e-6 54 Populus trichocarpa PtpAffx.214087.1.S1_at pmrna27425 hypothetical protein - 3e-10 At4g33230 pectinesterase family protein C.G. S.X.
0.02 1e+0 36 Triticum aestivum Ta.18244.1.A1_at CA632323 - - 3e-1 At2g26450 pectinesterase family protein C.G. S.X.
0.02 1e+0 34 Vitis vinifera 1617668_at CF514659 hypothetical protein LOC100243346 - 5e-4 At4g11080 high mobility group (HMG1/2) family protein C.G. S.X.
0.02 1e-1 38 Zea mays Zm.8326.1.A1_at BM073693 - - 1e+0 At5g07100 WRKY26 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0042545 The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00400 Homogalacturonan degradation
00422 Carbohydrate esterases
00442 Rhamnogalacturonan II degradation

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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