CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g26440

Gene name pectinesterase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.49 63.5 At2g26440 817184 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFM S.X. H.G.
0.74 86.1 At2g14560 815943 LURP1 (LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA) Encodes LURP1, a member of the LURP cluster (late upregulated in response to Hyaloperonospora parasitica) which exhibits a pronounced upregulation after recognition of the pathogenic oomycte H. parasitica. LURP1 is required for full basal defense to H. parasitica and resistance to this pathogen mediated by the R-proteins RPP4 and RPP5. S.X. H.G.
0.71 84.2 At2g40750 818670 WRKY54 member of WRKY Transcription Factor; Group III S.X. H.G.
0.69 82.9 At5g24210 832488 lipase class 3 family protein F:triacylglycerol lipase activity;P:lipid metabolic process;C:cellular_component unknown;PO S.X. H.G.
0.63 78.1 At1g21250 838721 WAK1 (CELL WALL-ASSOCIATED KINASE) cell wall-associated kinase, may function as a signaling receptor of extracellular matrix component. S.X. H.G.
0.54 69.5 At3g04210 819576 disease resistance protein (TIR-NBS class), putative F:transmembrane receptor activity, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, endomembrane system;PBMO S.X. H.G.
0.54 69.5 At3g56400 824807 WRKY70 member of WRKY Transcription Factor; Group III. Function as activator of SA-dependent defense genes and a repressor of JA-regulated genes. WRKY70-controlled suppression of JA-signaling is partly executed by NPR1. S.X. H.G.
0.54 69.5 At5g60900 836211 RLK1 (RECEPTOR-LIKE PROTEIN KINASE 1) Encodes a receptor-like protein kinase. S.X. H.G.
0.51 66.3 At5g10760 830943 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:apoplast;PMFO S.X. H.G.
0.48 62.5 At2g37710 818348 RLK (receptor lectin kinase) Induced in response to Salicylic acid. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
27.5 99.7 GSM134367 St.Clair_1-28_339_Cvi-1_0.30mM-SA-in-0.02%-silwet_Rep1_ATH1 GSE5753 Expression Level Polymorphism Project (ELP) - Cvi-1
27.4 99.7 GSM134386 St.Clair_1-47_334_Est_0.30mM-SA-in-0.02%-silwet_Rep2_ATH1 GSE5754 Expression Level Polymorphism Project (ELP) - Est
25.9 99.7 GSM269818 C2 leaf-well watered-rep1 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
24.6 99.6 GSM134359 St.Clair_1-20_361_Cvi-1_0.02%-silwet_Rep2_ATH1 GSE5753 Expression Level Polymorphism Project (ELP) - Cvi-1
24.2 99.6 GSM134387 St.Clair_1-48_397_Est_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1 GSE5754 Expression Level Polymorphism Project (ELP) - Est
21.7 99.6 GSM134441 St.Clair_1-66_380_Kin-0_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1 GSE5757 Expression Level Polymorphism Project (ELP) - Kin-0
20.9 99.6 GSM134405 St.Clair_1-102_350_Tsu-1_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1 GSE5755 Expression Level Polymorphism Project (ELP) - Tsu-1
19.5 99.6 GSM244455 Arabidopsis AtMYB30-ox_6 h_ Xanthomonas inoculated_biological rep1_exp1 GSE9674 Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints
18.4 99.5 E-MEXP-546-raw-cel-863289586
18.2 99.5 GSM134385 St.Clair_1-46_293_Est_0.30mM-SA-in-0.02%-silwet_Rep1_ATH1 GSE5754 Expression Level Polymorphism Project (ELP) - Est
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.05 1e-5 52 At3g49220 824083 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFM C.G. S.X.
0.04 9e-4 46 At3g10720 820241 pectinesterase, putative F:pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFM C.G. S.X.
0.02 1e-2 42 At5g04960 830378 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMO C.G. S.X.
0.04 1e-2 42 At4g33220 829458 enzyme inhibitor/ pectinesterase F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFM C.G. S.X.
0.03 1e-2 42 At3g43270 823402 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:plant-type cell wall;PBFM C.G. S.X.
0.02 5e-2 40 At2g47550 819368 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO C.G. S.X.
0.04 2e-1 38 At5g20860 832209 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFM C.G. S.X.
0.01 2e-1 38 At5g04970 830379 pectinesterase, putative F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall;MOPBFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e-3 46 Glycine max Gma.5447.2.S1_at BI969814 - - 3e-33 At4g33220 enzyme inhibitor/ pectinesterase C.G. S.X.
0.02 2e+0 34 Hordeum vulgare Contig17328_at Contig17328 - - 3e-2 At4g38020 tRNA/rRNA methyltransferase (SpoU) family protein C.G. S.X.
0.01 2e+0 36 Oryza sativa Os02g0685900 C22384 - Calcium dependent protein kinase 1e-16 At4g38230 CPK26 C.G. S.X.
0.15 5e-9 63 Populus trichocarpa PtpAffx.219727.1.S1_at pmrna35741 hypothetical protein - 4e-9 At2g26440 pectinesterase family protein C.G. S.X.
0.02 3e+0 34 Triticum aestivum TaAffx.29282.1.S1_at CA646379 - - 7e-1 At1g76510 ARID/BRIGHT DNA-binding domain-containing protein C.G. S.X.
0.06 3e-7 56 Vitis vinifera 1615574_at CB977067 hypothetical protein LOC100245304 - 7e-9 At2g45220 pectinesterase family protein C.G. S.X.
0.02 1e+0 34 Zea mays ZmAffx.866.1.A1_at AI770731 - - 2e-1 At5g55850 NOI C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0042545 The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00400 Homogalacturonan degradation
00422 Carbohydrate esterases
00442 Rhamnogalacturonan II degradation

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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