CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g26190

Gene name calmodulin-binding family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.62 77.3 At2g26190 817159 calmodulin-binding family protein F:calmodulin binding;P:N-terminal protein myristoylation;C:unknown;PFOB S.X. H.G.
0.73 85.5 At5g47910 834842 RBOHD (RESPIRATORY BURST OXIDASE HOMOLOGUE D) NADPH/respiratory burst oxidase protein D (RbohD).Interacts with AtrbohF gene to fine tune the spatial control of ROI production and hypersensitive response to cell in and around infection site. S.X. H.G.
0.70 83.5 At1g11050 837646 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.69 82.9 At3g16720 820924 ATL2 RING-H2 protein induced after exposure to chitin or inactivated crude cellulase preparations. S.X. H.G.
0.60 75.7 At1g07135 837224 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;BMPOFVA S.X. H.G.
0.59 74.7 At3g59080 825077 aspartyl protease family protein F:DNA binding, aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PMFO S.X. H.G.
0.55 70.6 At3g46600 823813 scarecrow transcription factor family protein F:transcription factor activity;P:response to chitin, regulation of transcription;C:cellular_component unknown;PBM S.X. H.G.
0.53 68.6 At1g70740 843411 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA S.X. H.G.
0.52 67.4 At1g28380 839735 NSL1 (necrotic spotted lesions 1) This gene is predicted to encode a protein involved in negatively regulating salicylic acid-related defense responses and cell death programs. nsl1 mutants develop necrotic lesions spontaneously and show other features of a defense response, such as higher levels of SA and disease resistance-related transcripts, in the absence of a biotic stimulus. The NSL1 protein is predicted to have a MACPF domain, found in proteins that form a transmembrane pore in mammalian immune responses. NSL1 transcript levels do not appear to change in response to biotic stresses, but are elevated by cycloheximide in seedlings, and by sodium chloride in roots. S.X. H.G.
0.50 65.3 At1g19770 838565 ATPUP14 Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
59.4 99.8 E-MEXP-807-raw-cel-1173273116
53.4 99.8 E-MEXP-807-raw-cel-1173273088
42.0 99.8 E-MEXP-807-raw-cel-1173273144
41.4 99.8 E-MEXP-807-raw-cel-1173273060
39.8 99.8 E-MEXP-807-raw-cel-1173273252
39.3 99.8 E-NASC-76-raw-cel-1359879132
38.9 99.8 GSM13783 Dexamethasone plus cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
38.4 99.8 GSM13784 Cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
36.7 99.7 GSM39205 Col_Chitin3 GSE2169 rre1 and rre2 mutants
35.6 99.7 GSM39197 RRE1_Chitin3 GSE2169 rre1 and rre2 mutants
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.57 1e-113 410 At4g33050 829442 EDA39 (embryo sac development arrest 39) F:calmodulin binding;P:polar nucleus fusion, response to chitin;C:cellular_component unknown;PFO C.G. S.X.
0.10 6e-11 69 At3g13600 820562 calmodulin-binding family protein F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;MOFPBVA C.G. S.X.
0.07 2e-10 67 At3g58480 825017 calmodulin-binding family protein F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PFOMB C.G. S.X.
0.11 9e-7 56 At5g57010 835803 calmodulin-binding family protein F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PFBO C.G. S.X.
0.04 1e-2 42 At3g52870 824453 calmodulin-binding family protein F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PFBO C.G. S.X.
0.01 2e-1 38 At3g20260 821570 structural constituent of ribosome F:structural constituent of ribosome;P:translation;C:ribosome, intracellular;MOPFVB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.17 1e-12 75 Glycine max Gma.13076.1.S1_at BQ473576 - - 9e-13 At2g26190 calmodulin-binding family protein C.G. S.X.
0.05 4e-1 36 Hordeum vulgare Contig18490_at Contig18490 - - 7e-5 At3g52870 calmodulin-binding family protein C.G. S.X.
0.08 3e-5 52 Oryza sativa Os05g0197300 AK106389.1 - IQ calmodulin-binding region domain containingprotein 2e-5 At2g26190 calmodulin-binding family protein C.G. S.X.
0.17 4e-25 117 Populus trichocarpa PtpAffx.206380.1.S1_at pmrna12672 hypothetical protein - 2e-13 At5g57010 calmodulin-binding family protein C.G. S.X.
0.05 6e-5 50 Triticum aestivum Ta.13245.1.S1_x_at BQ170197 - - 1e-2 At3g52870 calmodulin-binding family protein C.G. S.X.
0.14 8e-23 107 Vitis vinifera 1620562_at CB343617 hypothetical protein LOC100250890 - 3e-20 At4g33050 EDA39 (embryo sac development arrest 39) C.G. S.X.
0.02 5e+0 32 Zea mays Zm.3519.1.A1_at AW053043 - - 2e-1 At2g20613 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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